Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25810 433 / 3e-145 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G25830 426 / 2e-142 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) AT3G25820 426 / 2e-142 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1.2) AT4G16740 424 / 2e-142 ATTPS03 terpene synthase 03 (.1.2) AT2G24210 419 / 4e-140 AtTPS10 terpene synthase 10 (.1) AT4G16730 411 / 1e-137 AtTPS02 terpene synthase 02 (.1) AT5G23960 298 / 7e-94 ATTPS21 terpene synthase 21 (.1.2) AT1G61680 268 / 7e-82 ATTPS14 terpene synthase 14 (.1.2) AT3G29410 245 / 4e-73 AtTPS25 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G14490 243 / 2e-72 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G118600 [exp] 630 / 0 AT4G16740 462 / 3e-157 terpene synthase 03 (.1.2) Potri.019G023006 [exp] 518 / 1e-178 AT3G25830 540 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.019G023008 [exp] 508 / 1e-175 AT3G25830 535 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.001G308200 [exp] 495 / 1e-169 AT3G25810 499 / 4e-171 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.001G308300 [exp] 492 / 2e-168 AT3G25830 507 / 4e-174 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.019G022338 [exp] 489 / 2e-167 AT3G25830 483 / 8e-165 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.011G031800 [exp] 439 / 5e-148 AT3G25830 382 / 5e-126 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.007G119700 [exp] 441 / 2e-147 AT4G16740 438 / 8e-147 terpene synthase 03 (.1.2) Potri.019G023020 [exp] 399 / 2e-135 AT3G25830 440 / 1e-151 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018500 [exp] 523 / 0 AT4G16740 419 / 1e-140 terpene synthase 03 (.1.2) Lus10018501 [exp] 501 / 2e-171 AT4G16740 413 / 1e-137 terpene synthase 03 (.1.2) Lus10039713 [exp] 494 / 1e-168 AT4G16740 409 / 4e-136 terpene synthase 03 (.1.2) Lus10006356 [exp] 432 / 1e-144 AT3G25820 371 / 3e-121 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1.2) Lus10006355 [exp] 427 / 3e-142 AT2G24210 361 / 7e-117 terpene synthase 10 (.1) Lus10012312 [exp] 410 / 4e-136 AT4G16740 363 / 3e-118 terpene synthase 03 (.1.2) Lus10001110 [exp] 397 / 6e-132 AT3G25810 362 / 1e-118 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10025922 [exp] 389 / 3e-128 AT3G25810 353 / 3e-114 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10038179 [exp] 386 / 6e-127 AT3G25810 351 / 2e-113 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10033643 [exp] 384 / 7e-126 AT4G16730 356 / 2e-115 terpene synthase 02 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01397 [poplar] [flax] Terpene_synth Terpene synthase, N-terminal domain CL0613 [poplar] [flax] Terp_synthase PF03936 [poplar] [flax] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Potri.017G041700.7 pacid=42814263 polypeptide=Potri.017G041700.7.p locus=Potri.017G041700 ID=Potri.017G041700.7.v4.1 annot-version=v4.1 ATGGCAACTGAATTATTGTGCTTGCACCGTCCAATCTCACTGACACACAAATTGTTCAGAAATCCCTTACCTAAAGTCATCCAGGCCACTCCCTTAACTT TGAAACTCAGATGTTCTGTAAGCACAGAAAACGTCAGCTTCACAGAAACAGAAACAGAAACCAGACGCTCTGCCAATTACGAACCAAATAGCTGGGATTA TGATTATTTGCTGTCTTCGGACACTGACGAATCGATTGAAGTATACAAAGACAAGGCCAAAAAGCTGGAGGCTGAGGTGAGAAGAGAGATTAACAATGAA AAGGCAGAGTTTTTGACTCTGCTTGAACTGATAGATAATGTCCAAAGGTTAGGATTGGGTTACCGGTTCGAGAGTGACATAAGGAGAGCCCTTGATAGAT TTGTTTCTTCAGGAGGATTTGATGCTGTTACAAAAACTAGCCTTCATGCTACTGCTCTTAGCTTCAGGCTTCTCAGACAGCATGGCTTTGAGGTCTCTCA AGAAGCGTTCAGCGGATTCAAGGATCAAAATGGCAATTTCTTGGAAAACCTTAAGGAGGACATCAAGGCAATACTAAGCCTATATGAAGCTTCATTTCTT GCCTTAGAAGGAGAAAATATCTTGGATGAGGCCAAGGTGTTTGCAATATCACATCTAAAAGAGCTCAGCGAAGAAAAGATTGGAAAAGACCTGGCCGAAC AGGTGAATCATGCATTGGAGCTTCCATTGCATCGCAGGACGCAAAGACTAGAAGCTGTTTTGAGTATTGAAGCATACCGTAAAAAGGAAGATGCAGATCA AGTACTGCTAGAACTTGCTATATTGGACTACAACATGATTCAATCAGTATACCAAAGAGATCTTCGCGAGACATCAAGGTGGTGGAGGCGTGTGGGTCTT GCAACAAAGTTGCATTTTGCTAGAGACAGGTTAATTGAAAGCTTTTACTGGGCAGTTGGAGTTGCGTTCGAACCTCAATACAGTGATTGCCGTAATTCAG TAGCAAAAATGTTTTCATTTGTAACGATCATTGATGATATCTATGATGTTTATGGTACTCTGGATGAGTTGGAGCTATTTACAAATGCTGTTGAGAGATG GGATGTTAATGCCATCGATGATCTTCCGGATTATATGAAGCTCTGCTTCCTAGCTCTCTATAACACTATCAATGAGATAGCTTATGATAATCTGAAGGAA AAGGGGGAAAACATTCTTCCATACCTAACAAAAGCGTGGGCAGATTTATGCAATGCATTCCTACAAGAAGCAAAATGGTTGTACAATAAGTCCACACCAA CATTTGATGAGTATTTCGGAAATGCATGGAAATCATCCTCAGGGCCTCTTCAACTAGTTTTTGCCTACTTTGCCGTAGTTCAAAACATCAAGAAAGAGGA AATTGAAAACTTACAAAAGTATCATGATATCATCAGTAGGCCTTCCCACATCTTTCGTCTTTGCAACGACTTGGCTTCAGCATCGGCTGAGATAGCGAGA GGTGAAACTGCGAATTCTGTATCATGCTACATGCGTACAAAAGGCATTTCTGAGGAACTTGCTACTGAATCCGTAATGAATTTGATCGACGAAACCTGGA AAAAGATGAACAAAGAAAAGCTTGGTGGCTCTTTGTTTGCAAAACCTTTTGTCGAAACAGCTATTAACCTTGCACGACAATCCCATTGCACTTATCATAA CGGAGATGCGCATACTTCACCAGATGAGCTAACTAGGAAACGTGTCCTGTCAGTAATCACAGAGCCTATTCTACCCTTTGAGAGATAA
AA sequence Show only first row Show all	>Potri.017G041700.7 pacid=42814263 polypeptide=Potri.017G041700.7.p locus=Potri.017G041700 ID=Potri.017G041700.7.v4.1 annot-version=v4.1 MATELLCLHRPISLTHKLFRNPLPKVIQATPLTLKLRCSVSTENVSFTETETETRRSANYEPNSWDYDYLLSSDTDESIEVYKDKAKKLEAEVRREINNE KAEFLTLLELIDNVQRLGLGYRFESDIRRALDRFVSSGGFDAVTKTSLHATALSFRLLRQHGFEVSQEAFSGFKDQNGNFLENLKEDIKAILSLYEASFL ALEGENILDEAKVFAISHLKELSEEKIGKDLAEQVNHALELPLHRRTQRLEAVLSIEAYRKKEDADQVLLELAILDYNMIQSVYQRDLRETSRWWRRVGL ATKLHFARDRLIESFYWAVGVAFEPQYSDCRNSVAKMFSFVTIIDDIYDVYGTLDELELFTNAVERWDVNAIDDLPDYMKLCFLALYNTINEIAYDNLKE KGENILPYLTKAWADLCNAFLQEAKWLYNKSTPTFDEYFGNAWKSSSGPLQLVFAYFAVVQNIKKEEIENLQKYHDIISRPSHIFRLCNDLASASAEIAR GETANSVSCYMRTKGISEELATESVMNLIDETWKKMNKEKLGGSLFAKPFVETAINLARQSHCTYHNGDAHTSPDELTRKRVLSVITEPILPFER

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G25810			Terpenoid cyclases/Protein pre...		Potri.017G041700 [exp]	0	1
AT1G60470		ATGOLS4	galactinol synthase 4 (.1)		Potri.008G189400 [exp]	1.41	0.9739
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Potri.017G030600 [exp]	1.41	0.9836
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Potri.017G030400 [exp]	4.89	0.9610
AT2G47450		CPSRP43, CAO	CHLOROPLAST SIGNAL RECOGNITION...		Potri.009G140500 [exp]	6.00	0.9645	Pt-CAO.3
ATCG00600		ATCG00600.1, PE...	PETG (.1)		Potri.003G048150 [exp]	15.19	0.9413
AT5G52960			unknown protein		Potri.012G033700 [exp]	15.49	0.9585
AT5G51545		LPA2	low psii accumulation2 (.1)		Potri.015G129600 [exp]	16.12	0.9506
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Potri.010G127300 [exp]	19.13	0.9581
AT4G23140		RLK5, CRK6	cysteine-rich RLK (RECEPTOR-li...		Potri.004G028400 [exp]	19.59	0.9353
AT3G54210			Ribosomal protein L17 family p...		Potri.016G143100 [exp]	23.23	0.9517

Compare expression of checked genes

Potri.017G041700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.