Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54010 348 / 1e-116 UDP-Glycosyltransferase superfamily protein (.1) AT5G54060 342 / 3e-114 UF3GT UDP-glucose:flavonoid 3-o-glucosyltransferase (.1) AT2G22930 337 / 2e-112 UDP-Glycosyltransferase superfamily protein (.1) AT5G53990 332 / 2e-110 UDP-Glycosyltransferase superfamily protein (.1) AT4G27570 330 / 1e-109 UDP-Glycosyltransferase superfamily protein (.1) AT4G27560 325 / 1e-107 UDP-Glycosyltransferase superfamily protein (.1) AT4G09500 322 / 6e-107 UDP-Glycosyltransferase superfamily protein (.1.2) AT1G64910 321 / 2e-106 UDP-Glycosyltransferase superfamily protein (.1) AT3G29630 313 / 4e-103 UDP-Glycosyltransferase superfamily protein (.1) AT1G64920 307 / 9e-101 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G061000 [exp] 464 / 2e-162 AT5G54010 468 / 6e-163 UDP-Glycosyltransferase superfamily protein (.1) Potri.011G097900 [exp] 350 / 1e-117 AT5G54010 498 / 1e-174 UDP-Glycosyltransferase superfamily protein (.1) Potri.006G179700 [exp] 257 / 2e-81 AT5G54010 349 / 2e-116 UDP-Glycosyltransferase superfamily protein (.1) Potri.010G182575 [exp] 160 / 2e-44 AT5G49690 468 / 7e-163 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G042800 [exp] 151 / 6e-41 AT5G49690 377 / 3e-127 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G030600 [exp] 146 / 4e-39 AT2G22590 537 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.002G162300 [exp] 144 / 2e-38 AT2G22590 372 / 6e-125 UDP-Glycosyltransferase superfamily protein (.1) Potri.012G034100 [exp] 144 / 3e-38 AT2G22590 505 / 2e-177 UDP-Glycosyltransferase superfamily protein (.1) Potri.014G088400 [exp] 134 / 1e-34 AT2G22590 374 / 4e-125 UDP-Glycosyltransferase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013337 [exp] 348 / 1e-116 AT5G54010 452 / 1e-156 UDP-Glycosyltransferase superfamily protein (.1) Lus10008453 [exp] 325 / 1e-107 AT5G54010 539 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10004381 [exp] 316 / 8e-104 AT5G54060 437 / 1e-150 UDP-glucose:flavonoid 3-o-glucosyltransferase (.1) Lus10040178 [exp] 309 / 2e-101 AT5G54010 437 / 7e-151 UDP-Glycosyltransferase superfamily protein (.1) Lus10003154 [exp] 254 / 5e-80 AT5G54010 318 / 3e-104 UDP-Glycosyltransferase superfamily protein (.1) Lus10012726 [exp] 154 / 6e-42 AT2G22590 471 / 3e-164 UDP-Glycosyltransferase superfamily protein (.1) Lus10039237 [exp] 141 / 2e-38 AT5G54010 240 / 5e-76 UDP-Glycosyltransferase superfamily protein (.1) Lus10035951 [exp] 135 / 3e-35 AT2G22590 464 / 3e-161 UDP-Glycosyltransferase superfamily protein (.1) Lus10025711 [exp] 134 / 1e-34 AT2G22590 473 / 2e-164 UDP-Glycosyltransferase superfamily protein (.1) Lus10027850 [exp] 130 / 2e-33 AT5G49690 560 / 0.0 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.017G041900.1 pacid=42814012 polypeptide=Potri.017G041950.1.p locus=Potri.017G041900 ID=Potri.017G041900.1.v4.1 annot-version=v4.1 ATGGCTGCAACACCTGCATACCACATAGCAATGTACCCTTGGTTTGCCTTTGGTCACCTCACACCATTTCTTCACCTTGCAAACAAACTAGCACAGGCAG GCCACAAAATCTCCTTTCTTCTCCCCACCAGAACTCAGTCCAAGTTACAGCAATTCAACCTCCATCCAGACATCATTACCTTCATTCCAATTACTGTTCC CCATGTGGATGGCCTCCCTCCAGGAGCTGAAACCACCTCAGATGTACCTTTCCCTTCTTTCACACATATCATGACTGCCATGGACCGTACTGAGAGTGAT ATTGAATCCATTTACTACTGCGTTGTTAGCTCGGTAACTATTGGATATATTATGTCTCCGGCAAGACGACTAAGTGGTAACAAGTTGACTAAAGCTGACC TTATGCAGCCACCATTAGGCTTTCCAGACTTGCCGATCAAGCTCAAAGCTCACGAGGCAGAAGTCTACATTGCAAGGAGAGTTATGAAGTTTGGTAGTGA TGTCATGTTCTGTGATCGCATATATATGGGAATGAGCCAATGTGATGCAATTGGATTCAGGACATGCCGAGAAATTGAAGGACCTTATGCTGACTATGTT GGAAACCAGTTTGACAAGCCAGTCTTATTTTCAGGACCAGTTATCCCAGAGCCAAACACCTCAACTTTAGAAGAGAAGTTTGAATGCACTTTGGAGAAGG ATCAGTTTGAAGAGTTGCTCTTAGGTTTGGAGCTCACTGGTATGCCATTCTTGGCAGCACTTAAACCACCTGCGGGTTATGAGTCAATTGAACTTGCATT GCCCCAAGGTTTTCAAGAGAGGATCTGTGGAAGAGGTATGGTCCATGGAGGATGGGTTCAGCAGCAGTTGATTCTGGAGCATCCATCAGTTGGATGCTTC ATTACACATTGTGGATCCGGTTCCTTATCTGAGGCATTGATAAATAAATGTCAGCTGGTTCTGCTACCACATGTAGGTGACCATATATTCCAAGCAAGAC TGATGAGCCTGCATTTGAAGGTGGGAGTGGAGGTGGAGAAAGGAGAAGAAGATGGGTTATTCACCAAGGAAACTGTCTACAAGGCTGTGAGAACTGTAAT GGAGGAAGAACGTGAGTTTGGCAGAGATGTCAAAACCAACCGTGCAAAACTGAGAGAGTTCTTGAGCAGAAAAAGTCTAGAGTCCTCTTACATTGACAGT TTCAATGAACAGCTTCGAGTTCTTCTTGGATAG
AA sequence Show only first row Show all	>Potri.017G041900.1 pacid=42814012 polypeptide=Potri.017G041950.1.p locus=Potri.017G041900 ID=Potri.017G041900.1.v4.1 annot-version=v4.1 MAATPAYHIAMYPWFAFGHLTPFLHLANKLAQAGHKISFLLPTRTQSKLQQFNLHPDIITFIPITVPHVDGLPPGAETTSDVPFPSFTHIMTAMDRTESD IESIYYCVVSSVTIGYIMSPARRLSGNKLTKADLMQPPLGFPDLPIKLKAHEAEVYIARRVMKFGSDVMFCDRIYMGMSQCDAIGFRTCREIEGPYADYV GNQFDKPVLFSGPVIPEPNTSTLEEKFECTLEKDQFEELLLGLELTGMPFLAALKPPAGYESIELALPQGFQERICGRGMVHGGWVQQQLILEHPSVGCF ITHCGSGSLSEALINKCQLVLLPHVGDHIFQARLMSLHLKVGVEVEKGEEDGLFTKETVYKAVRTVMEEEREFGRDVKTNRAKLREFLSRKSLESSYIDS FNEQLRVLLG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54010			UDP-Glycosyltransferase superf...		Potri.017G041900 [exp]	0	1
AT5G45600		TAF14b, GAS41	TBP-ASSOCIATED FACTOR 14B, GLI...		Potri.007G012700 [exp]	3.46	0.8940
AT2G33860	ARF	ARF3, ETT	ETTIN, AUXIN RESPONSE TRANSCRI...		Potri.011G059101 [exp]	6.00	0.8751
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Potri.009G157000 [exp]	9.38	0.8904
AT5G06710	HD	HAT14	homeobox from Arabidopsis thal...		Potri.016G058600 [exp]	16.12	0.8234
AT3G51560			Disease resistance protein (TI...		Potri.019G070102 [exp]	21.21	0.8237
AT3G16910		AAE7, ACN1	ACETATE NON-UTILIZING 1, acyl-...		Potri.010G141501 [exp]	22.44	0.8130
AT1G10930		ATSGS1, RECQL4A...	DNA helicase (RECQl4A) (.1)		Potri.003G015800 [exp]	25.13	0.8663
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Potri.008G188700 [exp]	29.32	0.8314
AT5G46070			Guanylate-binding family prote...		Potri.017G016800 [exp]	30.65	0.8273
					Potri.012G030301 [exp]	32.00	0.8381

Compare expression of checked genes

Potri.017G041900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.