Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32430 803 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G27610 390 / 6e-123 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G16480 369 / 1e-114 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G18750 365 / 9e-114 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33990 362 / 6e-113 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 360 / 2e-112 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G09040 358 / 1e-109 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G39530 353 / 3e-109 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21300 352 / 1e-108 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 353 / 2e-107 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G184800 [exp] 385 / 6e-121 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G021700 [exp] 377 / 1e-119 AT3G47840 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G124400 [exp] 372 / 2e-118 AT5G39350 785 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G191000 [exp] 373 / 3e-117 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G111300 [exp] 372 / 8e-116 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G058700 [exp] 367 / 2e-114 AT1G15510 1113 / 0.0 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G146800 [exp] 362 / 4e-114 AT3G25970 805 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 368 / 5e-114 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 361 / 6e-112 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017032 [exp] 972 / 0 AT4G32430 844 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021355 [exp] 949 / 0 AT4G32430 835 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004892 [exp] 382 / 7e-120 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014594 [exp] 365 / 8e-115 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015225 [exp] 368 / 1e-114 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 367 / 1e-114 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10032091 [exp] 361 / 7e-113 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001220 [exp] 362 / 4e-112 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038400 [exp] 359 / 3e-111 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018978 [exp] 363 / 5e-111 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.017G042100.1 pacid=42812845 polypeptide=Potri.017G042100.1.p locus=Potri.017G042100 ID=Potri.017G042100.1.v4.1 annot-version=v4.1 ATGTCAATGTCTAAAGTCGGTGAATCGGTTCTGTTTGTAATGATTTTCCGCCAACAATTTTCCAAAACCCTCCCTGGAATAAGAGCGAAACCTTGCATAA AACGAAGTTTTAGCACTAACAAAACTGGCGAGAGCAGCCATGCACACAACTTGCTTGACAAAACTCCTCACCGAAATCTCTCATTTCAAATCATCAAGGA GCACCTTCTGTCGGGTTTTATCAACAATATCGATGAATTTACTGTCGCTAACGCCCTCAAAGCTTGCCGTGGATACCCACCACTCGGATCCCAAATCCAC GGGTTTTCCATTATACATGAGTTCGTTAACGTCACTATAGTCTCTAATTCGCTAATGAATATGTACTGCAAATCTGGACAGTTTTGCAAAGCTTTATGTA TCTTTGAGGATTTGACTCATCCTGACATTGTTTCTTGGAACACGGTGCTTTCGGGCTGCCAAACAAGTGAAGATGCGTTTAGTTTTGCTTGTAAGATGAA TTCAAGTGGGGTTGTTTTCGATGCTGTTACTTATACTACAGTCCTTTCTTTTTGTTGGAGGCATGTGGAAGCCTACTTTCTCATTGGGCTGCAGTTGCAT TCTTGTATTGTAAAGTTTGGGTTTGATTGTGAAGTTTTCGTTGGGAATGCGCTCATAAGTATGTATTCGAGATGGGGACATTTAGTGGAGGCTAGAAGAG TGTTCGAGGAAATGAAAACTAGGGATCTGGTTTCTTGGAATGCAATGATTTCAGGGTATAGCCAGGAAGGTATTTATGGCCTTGAAGCGATTTCCATGTT CCTTCAAATGTTTCGGGGAGGCATGGAGCTTGATCGAATCTCATTTACTAGTGCAGTTTCAGCTTGTGGATATGAAAAGAACTTGGAGCTTGCCAGACAG ATACATGGTTTGAGTATAAAAACAAGACATGAGAAGCATGTTGCCGTGTCTAATGTTCTGATCTCAACATATTTTAAATGCCAAGTTATTGAAGATGCTA GATTAGTCTTCCAAAATATGAACGAACGCAATGTAGTTTCATGGACTACGATGATATCTATTGATGAAGCAGAAGCTGTGTCTTTCTTTAATGAGATGAG ATTAGACGGGGTTTATCCCAATGATGTTACATTTGTTGGCTTAATCCATGCTATAACAATTGGGGAGCTTGTTGTGCAAGGAAACATGGTTCATGGGTTT TGTACAAAGACCGGTTTCTCATCAAAATCAAATGTTTGTAATAGCATCATCACCATGTATGCTAAGTTCAAGTCCATGCAAGACTCAGTTAAGGTGTTTC AAGAGCTTAAGTACCAGGATATCATAGCATGGAATGCATTAATTTCTGGGTTTGTACACAATGGGTTGTGTCAAGAAGCTATCCGGGCATTCTTCTCAGG ACTTATAGAATCCAAGCCAAACCAATACTCATTTGGTAGCATCTTGAATGCAATTGGTGCTGCCGAGGATGTATCCCTAAAATACGGTCAAAGGTGCCAC TCTCAGATAATAAAACTTGGACTCAACCCTGACCCCATTGTTTCTAGTGCCCTTCTCGATATGTATGCAAAGCGTGGGAGCATTTGTGAGTCTCAAAAAG TTTTTGTGGAGACGCCTCAGCAAAGTCAATTTGCCTGGACAACAATCATCTCTGCCTATGCAAGGCATGGGGACTATGAATCAGTCATGAATTGGTTTGA GGAGATGAGGAGGCTTGAGGTGAGACCTGACTCAATCACCTTTCTTTCTATATTAACAGCCTGTGGAAGAAGGGGAATGGTTGATATGGGCTGTCACCTC TTCGGCTCAATGGTTAAAGACTATCAGATAGAACCATCAGCGGAGCATTATTCTTGTTTGGTGGATATGCTGGGTCGTGCAGGGCGACTAGAGGAGGCAG AGAGATTGATGAGTCATATTCCAGGGGGTCCCGGATTGTCTGTGTTGCAAAGCTTGCTAGGAGCATGTAGGGTACACGGGAATGTGGACATGGGAGAGAG GGTAGCTGATGCTTTGATGGAGATGGAGCCAACAGAGTCAGGCTCCTATGTGTTGATGTCCAACTTGTATGCTGAGATTGGAAAATGGGAAATGGTGGCA AAAGTAAGAAAAAGGATGAGAGTCAAGGGAGTGAAGAAGGAAGTAGGATTTAGCTGGGTAGATGTTGGTGGCATTGACAGTTCCTTGTCTTTACATGGGT TTTCATCAGGGGACACGTCCCATCCACAATCTGAGGCAATATGCAGGATGGCAGAATGCCTGGGATTCGAAATGAAATTTTTGAGAGAGGAAGAGATAGA GTGTCAGAAACACAGTCTCATGTGCGATGGAGATCTTGTAACCCCTCAATAA
AA sequence Show only first row Show all	>Potri.017G042100.1 pacid=42812845 polypeptide=Potri.017G042100.1.p locus=Potri.017G042100 ID=Potri.017G042100.1.v4.1 annot-version=v4.1 MSMSKVGESVLFVMIFRQQFSKTLPGIRAKPCIKRSFSTNKTGESSHAHNLLDKTPHRNLSFQIIKEHLLSGFINNIDEFTVANALKACRGYPPLGSQIH GFSIIHEFVNVTIVSNSLMNMYCKSGQFCKALCIFEDLTHPDIVSWNTVLSGCQTSEDAFSFACKMNSSGVVFDAVTYTTVLSFCWRHVEAYFLIGLQLH SCIVKFGFDCEVFVGNALISMYSRWGHLVEARRVFEEMKTRDLVSWNAMISGYSQEGIYGLEAISMFLQMFRGGMELDRISFTSAVSACGYEKNLELARQ IHGLSIKTRHEKHVAVSNVLISTYFKCQVIEDARLVFQNMNERNVVSWTTMISIDEAEAVSFFNEMRLDGVYPNDVTFVGLIHAITIGELVVQGNMVHGF CTKTGFSSKSNVCNSIITMYAKFKSMQDSVKVFQELKYQDIIAWNALISGFVHNGLCQEAIRAFFSGLIESKPNQYSFGSILNAIGAAEDVSLKYGQRCH SQIIKLGLNPDPIVSSALLDMYAKRGSICESQKVFVETPQQSQFAWTTIISAYARHGDYESVMNWFEEMRRLEVRPDSITFLSILTACGRRGMVDMGCHL FGSMVKDYQIEPSAEHYSCLVDMLGRAGRLEEAERLMSHIPGGPGLSVLQSLLGACRVHGNVDMGERVADALMEMEPTESGSYVLMSNLYAEIGKWEMVA KVRKRMRVKGVKKEVGFSWVDVGGIDSSLSLHGFSSGDTSHPQSEAICRMAECLGFEMKFLREEEIECQKHSLMCDGDLVTPQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32430			Pentatricopeptide repeat (PPR)...		Potri.017G042100 [exp]	0	1
AT1G45332			Translation elongation factor ...		Potri.001G123600 [exp]	8.06	0.8286
AT4G21705			Tetratricopeptide repeat (TPR)...		Potri.011G120900 [exp]	12.32	0.8184
AT3G55010		EMB2818, ATPURM...	EMBRYO DEFECTIVE 2818, phospho...		Potri.002G198600 [exp]	13.22	0.8184
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.014G132100 [exp]	13.71	0.8204
AT1G02370			Tetratricopeptide repeat (TPR)...		Potri.014G119000 [exp]	17.14	0.8111
AT4G28450			nucleotide binding;protein bin...		Potri.007G137300 [exp]	17.88	0.7874
AT4G17950	AT-hook		AT hook motif DNA-binding fami...		Potri.003G090900 [exp]	17.97	0.7877
AT5G08310			Tetratricopeptide repeat (TPR)...		Potri.005G090600 [exp]	19.67	0.8187
AT3G48250		BIR6	Buthionine sulfoximine-insensi...		Potri.015G084800 [exp]	20.00	0.8079
AT1G63250			DEA(D/H)-box RNA helicase fami...		Potri.003G124100 [exp]	21.97	0.7873

Compare expression of checked genes

Potri.017G042100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.