Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21175 171 / 3e-50 GATA GATA24, TIFY2B, ZML1 ZIM LIKE 1, GATA TRANSCRIPTION FACTOR 24, ZIM-like 1 (.1.2.3) AT1G51600 157 / 3e-45 GATA GATA28, TIFY2A, ZML2 GATA TRANSCRIPTION FACTOR 28, ZIM-LIKE 2 (.1.2) AT4G24470 139 / 3e-38 GATA GATA25, TIFY1, ZIM Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3) AT3G24050 52 / 2e-07 GATA GATA1 GATA transcription factor 1 (.1) AT4G34680 48 / 6e-06 GATA GATA3 GATA transcription factor 3 (.1.2) AT4G17570 46 / 3e-05 GATA GATA26 GATA transcription factor 26 (.1.2.3) AT4G32890 46 / 3e-05 GATA GATA9 GATA transcription factor 9 (.1) AT1G08010 46 / 3e-05 GATA GATA11 GATA transcription factor 11 (.1.2) AT3G54810 46 / 3e-05 GATA GATA8, BME3, BME3-ZF GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2) AT2G45050 45 / 3e-05 GATA GATA2 GATA transcription factor 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G116700 [exp] 598 / 0 AT3G21175 155 / 3e-44 ZIM LIKE 1, GATA TRANSCRIPTION FACTOR 24, ZIM-like 1 (.1.2.3) Potri.002G110800 [exp] 236 / 6e-75 AT3G21175 230 / 1e-73 ZIM LIKE 1, GATA TRANSCRIPTION FACTOR 24, ZIM-like 1 (.1.2.3) Potri.005G152500 [exp] 236 / 9e-75 AT3G21175 208 / 4e-65 ZIM LIKE 1, GATA TRANSCRIPTION FACTOR 24, ZIM-like 1 (.1.2.3) Potri.010G251600 [exp] 159 / 1e-45 AT1G51600 298 / 9e-101 GATA TRANSCRIPTION FACTOR 28, ZIM-LIKE 2 (.1.2) Potri.007G116550 [exp] 147 / 3e-41 AT3G21175 228 / 3e-73 ZIM LIKE 1, GATA TRANSCRIPTION FACTOR 24, ZIM-like 1 (.1.2.3) Potri.002G110900 [exp] 143 / 1e-39 AT4G24470 253 / 2e-83 Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3) Potri.005G152800 [exp] 141 / 3e-39 AT4G24470 264 / 1e-87 Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3) Potri.017G042300 [exp] 73 / 7e-16 AT1G51600 71 / 9e-16 GATA TRANSCRIPTION FACTOR 28, ZIM-LIKE 2 (.1.2) Potri.001G188500 [exp] 50 / 1e-06 AT4G32890 201 / 7e-63 GATA transcription factor 9 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028166 [exp] 214 / 9e-64 AT4G24470 233 / 4e-72 Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3) Lus10002412 [exp] 143 / 8e-40 AT4G24470 231 / 6e-75 Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3) Lus10032839 [exp] 143 / 9e-40 AT4G24470 231 / 8e-75 Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3) Lus10042865 [exp] 99 / 2e-23 AT4G24470 131 / 6e-36 Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3) Lus10028178 [exp] 51 / 4e-07 AT2G45050 204 / 3e-65 GATA transcription factor 2 (.1) Lus10042879 [exp] 50 / 5e-07 AT2G45050 147 / 1e-43 GATA transcription factor 2 (.1) Lus10023684 [exp] 49 / 2e-06 AT3G24050 168 / 3e-52 GATA transcription factor 1 (.1) Lus10037398 [exp] 49 / 3e-06 AT1G08010 169 / 1e-50 GATA transcription factor 11 (.1.2) Lus10025829 [exp] 49 / 3e-06 AT4G32890 221 / 2e-70 GATA transcription factor 9 (.1) Lus10041313 [exp] 49 / 3e-06 AT1G08010 163 / 2e-48 GATA transcription factor 11 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [poplar] [flax] Zn_Beta_Ribbon PF00320 [poplar] [flax] GATA GATA zinc finger CL0167 [poplar] [flax] PF06200 [poplar] [flax] tify tify domain CL0281 [poplar] [flax] CCT PF06203 [poplar] [flax] CCT CCT motif
Representative CDS sequence Show only first row Show all	>Potri.017G042200.2 pacid=42813291 polypeptide=Potri.017G042200.2.p locus=Potri.017G042200 ID=Potri.017G042200.2.v4.1 annot-version=v4.1 ATGATAAAAAAAATGGAGTTGGTGAATCATCAGAGGCAAAAGAAAGGAAGGAAGGGTAGGGATCATCATAACAGAGGAGTGATGCAGATCGAGGGTGTTG ATTATGATTATGGATATGGGTTTGATGATGGGATGATGGAGATGATTAATGGAGGAGTAGTAGAAGAAGTGAGACAAATTAATACTAACAGCAATTATAG TGGTGTTGTTATTGGTAATAGGAATGATAGAGTGGTTGAAACAACAAGAACAAGTGAGCTTACTATTGCTTTTGAAGGAGAAGTCTATGTTTTCCCAGCT GTTACTCCTTCTAAAGTGCAAGCTGTGTTGTTTCTTTTGGGAGAGCCTGAGACATCCACAATTGCGCCAAACTCTGATTTTTTTCTCCAACAGAATGCCA GGAGTGCAGGTGATGCCTCACAGGGCTTGAAATTTTCACGAAGAATTGCCTCCCTGGAAAGGTTTCGTGAAAAGCGGAAGGAGAGATGCTTTGAAAAGAA AGTTAGGTATACATGCCGAAAAGAGGTTGCTCAGAGGATGCATCGTAAGAAAGGACAATTTGCATCGTCAAATGATTGTTACAGCACAGATACTGGCAAC TGGGAACCTAGCAACAGCATGCCTAATCCTGAATCTCTTTTGCTTAGATGTCAACACTGTGGCATTAGTGCGAAGGATACCCCAGCAATGCGACGGGGAC CAGCTGGTCCAAGAACTCTTTGCAATGCTTGTGGCCTTATGTGGGCAAATAAGGGAACTTTGAGGGATCTTAGCAAAGGGGGACGGCATATTTCCTTCAA TCAAAATGAACCGGTAACTCCTGATTTTAAACCTTTAAACATGGAGCTTGAAAACCCTTTCGCTAATCCAGAAGAAGAGGAGAGCCAAGAAGAAAGTAAG CCTGTGCCATTAGAGTCTGAAAACTCTATTAGGCCAAATGAGCAGGATATGCTAGAAACTGATAAAAATGTTCCTGATCCTTTGCCCATGCATGTGGAGA ATTCATCAGTCAACCTTGATGATGAGGACTTTGAGAACACTTTGGATGAGCTTGGTGATGTTTCAGGTTCAGAATTTGAAATCCCCGAGCATTTTGATGA TCAGGTCCACATCGAGGATTCCAGTACAGGGACTGAGTGGCATGGGACTTGA
AA sequence Show only first row Show all	>Potri.017G042200.2 pacid=42813291 polypeptide=Potri.017G042200.2.p locus=Potri.017G042200 ID=Potri.017G042200.2.v4.1 annot-version=v4.1 MIKKMELVNHQRQKKGRKGRDHHNRGVMQIEGVDYDYGYGFDDGMMEMINGGVVEEVRQINTNSNYSGVVIGNRNDRVVETTRTSELTIAFEGEVYVFPA VTPSKVQAVLFLLGEPETSTIAPNSDFFLQQNARSAGDASQGLKFSRRIASLERFREKRKERCFEKKVRYTCRKEVAQRMHRKKGQFASSNDCYSTDTGN WEPSNSMPNPESLLLRCQHCGISAKDTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRHISFNQNEPVTPDFKPLNMELENPFANPEEEESQEESK PVPLESENSIRPNEQDMLETDKNVPDPLPMHVENSSVNLDDEDFENTLDELGDVSGSEFEIPEHFDDQVHIEDSSTGTEWHGT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21175	GATA	GATA24, TIFY2B,...	ZIM LIKE 1, GATA TRANSCRIPTION...		Potri.017G042200 [exp]	0	1
AT3G28730		NFD, SSRP1, ATH...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.004G124000 [exp]	4.89	0.7332	ATHMG.2
AT1G15280			CASC3/Barentsz eIF4AIII bindin...		Potri.003G056500 [exp]	10.86	0.7491
AT1G21080			DNAJ heat shock N-terminal dom...		Potri.005G260400 [exp]	20.39	0.6447
AT5G42820	C3HZnF	ATU2AF35B	Zinc finger C-x8-C-x5-C-x3-H t...		Potri.006G116700 [exp]	23.02	0.6297
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Potri.004G201900 [exp]	26.03	0.7065
AT1G75510			Transcription initiation facto...		Potri.002G028900 [exp]	29.03	0.7362
AT5G53930			unknown protein		Potri.011G115900 [exp]	36.46	0.6887
AT1G04300			TRAF-like superfamily protein ...		Potri.008G163300 [exp]	36.87	0.6935
AT4G02220			zinc finger (MYND type) family...		Potri.002G201200 [exp]	38.43	0.7000
AT5G15270			RNA-binding KH domain-containi...		Potri.017G085500 [exp]	42.47	0.6109

Compare expression of checked genes

Potri.017G042200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.