Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64390 345 / 1e-106 HEN4 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) AT2G22600 186 / 2e-50 RNA-binding KH domain-containing protein (.1) AT5G09560 186 / 3e-50 RNA-binding KH domain-containing protein (.1) AT1G51580 182 / 1e-48 RNA-binding KH domain-containing protein (.1) AT5G46190 140 / 2e-34 RNA-binding KH domain-containing protein (.1) AT5G15270 138 / 3e-34 RNA-binding KH domain-containing protein (.1.2) AT5G53060 125 / 8e-30 RNA-binding KH domain-containing protein (.1.2) AT4G18375 112 / 9e-26 RNA-binding KH domain-containing protein (.1.2) AT1G14170 71 / 1e-12 RNA-binding KH domain-containing protein (.1.2.3) AT4G26000 64 / 2e-10 PEP PEPPER, RNA-binding KH domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G116300 [exp] 935 / 0 AT5G64390 225 / 2e-62 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Potri.010G251700 [exp] 244 / 4e-71 AT1G51580 434 / 9e-145 RNA-binding KH domain-containing protein (.1) Potri.007G012000 [exp] 223 / 3e-64 AT2G22600 325 / 3e-104 RNA-binding KH domain-containing protein (.1) Potri.002G112200 [exp] 221 / 3e-62 AT5G53060 243 / 7e-71 RNA-binding KH domain-containing protein (.1.2) Potri.007G011900 [exp] 191 / 2e-50 AT2G22600 295 / 2e-87 RNA-binding KH domain-containing protein (.1) Potri.015G011100 [exp] 144 / 9e-36 AT5G53060 699 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.004G123400 [exp] 141 / 2e-35 AT5G15270 596 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.012G017200 [exp] 142 / 3e-35 AT5G53060 656 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.017G085500 [exp] 137 / 5e-34 AT5G15270 592 / 0.0 RNA-binding KH domain-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035640 [exp] 645 / 0 AT5G64390 337 / 8e-104 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10010754 [exp] 620 / 0 AT5G64390 311 / 5e-94 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10007236 [exp] 171 / 4e-44 AT5G64390 249 / 6e-73 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10028237 [exp] 165 / 2e-42 AT5G64390 243 / 8e-71 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10030689 [exp] 149 / 6e-38 AT5G15270 638 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10034831 [exp] 149 / 3e-37 AT1G51580 409 / 2e-134 RNA-binding KH domain-containing protein (.1) Lus10005232 [exp] 144 / 8e-36 AT5G15270 634 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10023300 [exp] 141 / 8e-35 AT5G46190 643 / 0.0 RNA-binding KH domain-containing protein (.1) Lus10038509 [exp] 136 / 4e-33 AT5G46190 653 / 0.0 RNA-binding KH domain-containing protein (.1) Lus10012725 [exp] 113 / 1e-25 AT2G22600 216 / 1e-61 RNA-binding KH domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [poplar] [flax] KH PF00013 [poplar] [flax] KH_1 KH domain
Representative CDS sequence Show only first row Show all	>Potri.017G042500.1 pacid=42814292 polypeptide=Potri.017G042500.1.p locus=Potri.017G042500 ID=Potri.017G042500.1.v4.1 annot-version=v4.1 ATGGCCACAGCTAGTTTTAGTCCTTTTCTCTCTGCCCCTGCAAAACGCCCCATAAATTCTAATACCATAATGCCCGACCCCAACCCGAATTACCCAAACG GATCCTCTGCCAACAAACGCTCAAAACCCCAGCCTTCTGCTTCAGCTGCTCCGTTACCCGTCCCTTCGGGACATGTATCCTTTCGTCTTCTCTGCCACGC TTCGAGAATCGGCGGCGTAATAGGAAAGGCCGGAAACATAATAAAAGGCTTACAACAACAAACCGGAGCCAAGGTTCGGATAGAAGATGCTCCGTCCGAT TCACCGGATCGGGTCATAACGGTGATCGGTCCGATTACGCAATCGGCGGTAGTATTTAGTAGAATTGAGAGTGCAGTTGAGGTTTCAAAGGGGCAGGAGG CTTTGGTTAGGGTTTTTGAGAGGATTTTAGAGGTGGCGGCGGAGAGTGATTCGGTGGCGGATGGGGTGGTTTCTTGTAGGATGTTAGCGGAGGTGAGTTC GGTTGGGGCAGTTATTGGGAAAGGAGGGAAAGTAGTGGAGAAGATTAGGAAAGATTGTGGGTGTAGAATTAAAGTTTTGGTTGATAAATTGCCTGATTGT GCTGCTTCGAATGAAGAGATGATTGAGATTGAAGGGGATGTTTCAGCAGTAAAGAAAGGACTTGTTGCGGTTTCTCGCTGCCTCCAAGATTGCCAACCGG TTGATAAGACAAGGGTGACCAACAGCAAACCTGCTGAGGCAGTTTCCAGAGTCTCTTTGTCTGATGTGCGTGTAGAAATCAATCCACGGCATTCTGCAGT GCTTCCCACCATAGCACAGAATTCATCAGTGCTACCCACTATACCACAACATTCTTTAGGGCTCCCCACCATACCGAAGAGCTCCATTAATTATGCTTCC AGAGTTCATCCTTTGTCATTGGAGTCTGACAGGGTTGTCACACCAGATACAAACATACCACAACAAGTGGTTTTTAGAATTCTGTGTACTACCGATAGGA TTGGGGGTGTTATTGGAAAAGGTGGCAACATTGTCAGGGCTCTTCAGAATGAGACAGGTGCTGCTATAAGCGTTGGACCAACGGTGTCTGAGTGTGATGA GCGACTAATCACTGTTACTGCATCTGAGAACCCAGAGTCTCGGTACTCAGCTGCACAAAAGACTATTGTACTTGTTTTCTCGAGGGCTGTGGAGTCTGGC ATTGAAAAGGGTCTGGATCCTGGCTCAAGCAGGGGGTCACCTGTTACTGCAAGGCTTGTAGTTTCACCAAGCCAAGTAGGCTGTTTGTTGGGAAAAGGAG GCACTATAATTTCAGAAATGCGTAAGGCAACCAGTACCAGCATAAGAATAATAGTGGGTGACCAGCGTAACCCGAAGTGTGTGCCAGAGACTGATCATGT GGTAGAGATTTCTGGAGACTTTGTGAATGTGAAAGATGCGATATATCATGTTACTGGAAGACTCCGAGATAATCTTTTCTCCGGCATGCTGAGCACTCCT GGAGCAAGGAGCAATTCTTCTGTATTAGCTGAAATCAGTCCCTATGTGAAATTGATGGATCCAGTGAGGGATTCATCGTGGGAGCCAGTGAGAGACCCAC TGAGGGATGCATTTAGGGATCCTTTGAGGGAGCCAGTGAGGGATCCATTTAGGGAGACAGTGAGGGATCCATTTAGGGAGCCTGTGAGGGATCCGTTTAG GGAGCCTGTGAGGGATCTGTTTAGGGAGCCAGTGAGGGATCCACTGCGGGAGCCAGCAAGAGATTCTGCCCCTTATATTATGCAGCCAACACCTGGAAAT TCTCATAATCTAAGTCGTCAAACTGTTATAACACAGAATATGGACCATCTTGGACTTTCACATAGTTTAGATCGCCCTCCTTCACCAAGGTTGTGGGCAT CACAGACAATACCTAGAGTAAATCCACGGGGCATATCAGATGTCAGCAGAAGATTGCCTTCTCTTAAAGCTGGCTTAGAGCTTGGCAGTGGAGGCAAGTC TGCTTTTGTTACAAACACAACTGTAGAGATTGTAGTTCCCGAGAATGCCTTTGGCTCTGTATATGGGGAGAATGGTAGCAATCTAGCTCGTTTGAGACAG ATCTCAGGTGCCAAGGTAATAGTGCACGAACCTCGTCTAGGAACAAGTGACAGGATTGTTGTTATATCTGGGACCCCTGATGAAACCCAAGCAGCTCAGA GCCTCCTTCAAGCATTTATCCTCACTGGACAATCATGA
AA sequence Show only first row Show all	>Potri.017G042500.1 pacid=42814292 polypeptide=Potri.017G042500.1.p locus=Potri.017G042500 ID=Potri.017G042500.1.v4.1 annot-version=v4.1 MATASFSPFLSAPAKRPINSNTIMPDPNPNYPNGSSANKRSKPQPSASAAPLPVPSGHVSFRLLCHASRIGGVIGKAGNIIKGLQQQTGAKVRIEDAPSD SPDRVITVIGPITQSAVVFSRIESAVEVSKGQEALVRVFERILEVAAESDSVADGVVSCRMLAEVSSVGAVIGKGGKVVEKIRKDCGCRIKVLVDKLPDC AASNEEMIEIEGDVSAVKKGLVAVSRCLQDCQPVDKTRVTNSKPAEAVSRVSLSDVRVEINPRHSAVLPTIAQNSSVLPTIPQHSLGLPTIPKSSINYAS RVHPLSLESDRVVTPDTNIPQQVVFRILCTTDRIGGVIGKGGNIVRALQNETGAAISVGPTVSECDERLITVTASENPESRYSAAQKTIVLVFSRAVESG IEKGLDPGSSRGSPVTARLVVSPSQVGCLLGKGGTIISEMRKATSTSIRIIVGDQRNPKCVPETDHVVEISGDFVNVKDAIYHVTGRLRDNLFSGMLSTP GARSNSSVLAEISPYVKLMDPVRDSSWEPVRDPLRDAFRDPLREPVRDPFRETVRDPFREPVRDPFREPVRDLFREPVRDPLREPARDSAPYIMQPTPGN SHNLSRQTVITQNMDHLGLSHSLDRPPSPRLWASQTIPRVNPRGISDVSRRLPSLKAGLELGSGGKSAFVTNTTVEIVVPENAFGSVYGENGSNLARLRQ ISGAKVIVHEPRLGTSDRIVVISGTPDETQAAQSLLQAFILTGQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G64390		HEN4	HUA ENHANCER 4, RNA-binding KH...		Potri.017G042500 [exp]	0	1
AT3G10650		AtNUP1	unknown protein		Potri.008G014800 [exp]	1.41	0.8874
AT4G31160		DCAF1	DDB1-CUL4 associated factor 1 ...		Potri.006G280200 [exp]	3.87	0.8886
AT1G21610			wound-responsive family protei...		Potri.005G182300 [exp]	6.63	0.8807
AT3G21290			dentin sialophosphoprotein-rel...		Potri.003G033100 [exp]	8.66	0.8832
AT4G39680			SAP domain-containing protein ...		Potri.007G086900 [exp]	9.89	0.8717
AT1G64140			unknown protein		Potri.001G097200 [exp]	10.24	0.8433
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Potri.002G028300 [exp]	13.78	0.8543
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Potri.009G015000 [exp]	14.28	0.8340
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Potri.011G024800 [exp]	16.43	0.8761
AT4G16310		LDL3	LSD1-like 3 (.1)		Potri.005G235400 [exp]	16.43	0.8807

Compare expression of checked genes

Potri.017G042500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.