Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49690 377 / 3e-127 UDP-Glycosyltransferase superfamily protein (.1) AT2G22590 370 / 1e-124 UDP-Glycosyltransferase superfamily protein (.1) AT5G65550 323 / 4e-106 UDP-Glycosyltransferase superfamily protein (.1) AT1G64910 228 / 8e-70 UDP-Glycosyltransferase superfamily protein (.1) AT5G54010 225 / 2e-68 UDP-Glycosyltransferase superfamily protein (.1) AT4G09500 223 / 2e-67 UDP-Glycosyltransferase superfamily protein (.1.2) AT2G22930 218 / 7e-66 UDP-Glycosyltransferase superfamily protein (.1) AT3G29630 217 / 3e-65 UDP-Glycosyltransferase superfamily protein (.1) AT5G53990 216 / 8e-65 UDP-Glycosyltransferase superfamily protein (.1) AT1G64920 211 / 3e-63 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G088400 [exp] 451 / 1e-155 AT2G22590 374 / 4e-125 UDP-Glycosyltransferase superfamily protein (.1) Potri.002G162300 [exp] 441 / 3e-152 AT2G22590 372 / 6e-125 UDP-Glycosyltransferase superfamily protein (.1) Potri.012G034100 [exp] 406 / 1e-138 AT2G22590 505 / 2e-177 UDP-Glycosyltransferase superfamily protein (.1) Potri.010G182575 [exp] 379 / 6e-128 AT5G49690 468 / 7e-163 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G030600 [exp] 373 / 2e-125 AT2G22590 537 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.003G184400 [exp] 359 / 4e-120 AT5G49690 549 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.006G179700 [exp] 244 / 2e-75 AT5G54010 349 / 2e-116 UDP-Glycosyltransferase superfamily protein (.1) Potri.011G097900 [exp] 224 / 9e-68 AT5G54010 498 / 1e-174 UDP-Glycosyltransferase superfamily protein (.1) Potri.010G182650 [exp] 201 / 1e-61 AT5G65550 254 / 4e-82 UDP-Glycosyltransferase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025711 [exp] 355 / 1e-118 AT2G22590 473 / 2e-164 UDP-Glycosyltransferase superfamily protein (.1) Lus10035951 [exp] 353 / 1e-117 AT2G22590 464 / 3e-161 UDP-Glycosyltransferase superfamily protein (.1) Lus10012726 [exp] 348 / 6e-116 AT2G22590 471 / 3e-164 UDP-Glycosyltransferase superfamily protein (.1) Lus10027850 [exp] 320 / 8e-105 AT5G49690 560 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10003154 [exp] 242 / 1e-74 AT5G54010 318 / 3e-104 UDP-Glycosyltransferase superfamily protein (.1) Lus10043445 [exp] 234 / 2e-71 AT5G65550 225 / 3e-68 UDP-Glycosyltransferase superfamily protein (.1) Lus10008453 [exp] 223 / 1e-67 AT5G54010 539 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10042242 [exp] 214 / 9e-66 AT5G65550 280 / 9e-92 UDP-Glycosyltransferase superfamily protein (.1) Lus10013337 [exp] 208 / 1e-61 AT5G54010 452 / 1e-156 UDP-Glycosyltransferase superfamily protein (.1) Lus10040178 [exp] 202 / 3e-59 AT5G54010 437 / 7e-151 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.017G042800.1 pacid=42814618 polypeptide=Potri.017G042800.1.p locus=Potri.017G042800 ID=Potri.017G042800.1.v4.1 annot-version=v4.1 ATGGCTTCCAAATCCCATGTGTTCATGTTCCCATGGTTTGCATTTGGCCACATACTACCGTATCTCGAGTTTTCGAAACAATTAGCAGCGAAGGGTATTC ATATATCATTCATATCCACCCCAAGAAATATTAAGAGATTACCTTCCATTCCTCAAAATATTTCAGGCAAGTTCAAGTTCATCGAGATCCAACTACCAAT TGTTGATGGCCTGCCTGAAAACTGTGAGGCCACCATTGACCTGTCACCGGAGCAAATACAGTATCTAAAGCAGGCATATGATGCCTTAAAGGTGCCATTT GAGAGCCTGGTTCAAAAAGAAGCACCAGAGATGATTCTGTTTGACTTTGCTGCTTGCTGGATCCCAGCTATTGCAGCTAGATATGGGATTACTTCTGTGT TTTTCAGTCCATTATCAGCTGCCTCATCAGCATATCTAGGGCCACCAGATGAGTTACATTCCTTCCGTCTACGTACTAGACCAGAAGATTATGCAAGAGC TCCAGAATGGATCCCCTTCCCTTCACTTGTTGCTTACAGGCCTGATCAGGGAACAAGGTATATGCAACATGTATACATTCCTGATGTATCTGGAATTTCA ACTGGCCAACGGCGGGCAAAAACTCTGGCAGAATGTGACATGGTTGCAGTAAGGAGTTGTAGAGAGTTTGAAGATTCCTATTTGAATGTCCTAGAAGAAA TCTACCAAAAGCCAGTTTTACCTATCGGCTTGCTCCCTTCAAATTTTGTTGAAAACAAAACTAGCCATCCTGAATCCTCCAATTTTTCTAGTACTTTTAA GTGGCTAGACAAACAAGAGCAAAAGTCTGTGGTCTTTGTGGGATTTGGAAGTGAGTACAAGATGCCAGTTGAAACAATCCATGAATTAGCCTATGGTATT GAACTTTCTGGGCTGCCATTCATGTGGATCCTCAAAAAGCCAGAAGGTATTGACAGCCAAGACTTATTGCCAACCGGGTTTGTCTCTCGGATCTCAGATC GGGGAATCGTTAGTTTTGGTTGGGCTCCACAACTAGAAATACTGGCTCATCCATCCATTGGGGGGTGCCTCTTTCATTCAGGATGGGGCTCCATCATTGA ATCACTTGGTTTCGGACACCCCTTAATTCTTATGCCTATGGTCAACGACCAGACACTTAATGCTAAGTTACTAGTGGAAAAGAGTGCTGGATTTGAAGTT CCAAGGAATAAAGATGGTTCATTCAACCGAGACATGGTTGCCAAGTCAATGAGACTAGTGATGGTCGACAAAGAAGGGGAGCCTATAAGACTTAAGACCT CTGAACTGCAAGCAATATTTTCTAGTCAGCACCTGCAAGATGACTACATCAGCAAGTTTATTCGATATACAAGCAGTTTCAAGAAAAAGGAACATTAA
AA sequence Show only first row Show all	>Potri.017G042800.1 pacid=42814618 polypeptide=Potri.017G042800.1.p locus=Potri.017G042800 ID=Potri.017G042800.1.v4.1 annot-version=v4.1 MASKSHVFMFPWFAFGHILPYLEFSKQLAAKGIHISFISTPRNIKRLPSIPQNISGKFKFIEIQLPIVDGLPENCEATIDLSPEQIQYLKQAYDALKVPF ESLVQKEAPEMILFDFAACWIPAIAARYGITSVFFSPLSAASSAYLGPPDELHSFRLRTRPEDYARAPEWIPFPSLVAYRPDQGTRYMQHVYIPDVSGIS TGQRRAKTLAECDMVAVRSCREFEDSYLNVLEEIYQKPVLPIGLLPSNFVENKTSHPESSNFSSTFKWLDKQEQKSVVFVGFGSEYKMPVETIHELAYGI ELSGLPFMWILKKPEGIDSQDLLPTGFVSRISDRGIVSFGWAPQLEILAHPSIGGCLFHSGWGSIIESLGFGHPLILMPMVNDQTLNAKLLVEKSAGFEV PRNKDGSFNRDMVAKSMRLVMVDKEGEPIRLKTSELQAIFSSQHLQDDYISKFIRYTSSFKKKEH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49690			UDP-Glycosyltransferase superf...		Potri.017G042800 [exp]	0	1
AT3G56970	bHLH	ORG2, bHLH038	OBP3-RESPONSIVE GENE 3, basic ...		Potri.016G037300 [exp]	7.74	0.7964	Pt-ORG2.3
AT5G62390		ATBAG7	BCL-2-associated athanogene 7 ...		Potri.015G126800 [exp]	9.16	0.8040	CBP.1
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Potri.006G165900 [exp]	15.58	0.8687
AT1G61310			LRR and NB-ARC domains-contain...		Potri.001G444600 [exp]	20.61	0.8325
AT5G17680			disease resistance protein (TI...		Potri.019G070700 [exp]	22.24	0.8081
AT4G18820			AAA-type ATPase family protein...		Potri.004G061700 [exp]	22.75	0.8518
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.018G134100 [exp]	23.97	0.8013
AT3G14470			NB-ARC domain-containing disea...		Potri.004G170400 [exp]	24.45	0.7996
AT2G01830		CRE1, AHK4, WOL...	WOODEN LEG 1, WOODEN LEG, CYTO...		Potri.010G102900 [exp]	30.39	0.7716	CRE1.1
AT4G27190			NB-ARC domain-containing disea...		Potri.001G444000 [exp]	33.16	0.8160

Compare expression of checked genes

Potri.017G042800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.