Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64380 552 / 0 Inositol monophosphatase family protein (.1) AT3G54050 272 / 6e-88 HCEF1 high cyclic electron flow 1 (.1.2) AT1G43670 241 / 8e-77 FINS1, AtcFBP FRUCTOSE INSENSITIVE 1, Arabidopsis thaliana cytosolic fructose-1,6-bisphosphatase, Inositol monophosphatase family protein (.1) AT3G55800 76 / 8e-15 SBPASE sedoheptulose-bisphosphatase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G106900 [exp] 268 / 4e-86 AT3G54050 619 / 0.0 high cyclic electron flow 1 (.1.2) Potri.016G109000 [exp] 254 / 5e-81 AT3G54050 526 / 0.0 high cyclic electron flow 1 (.1.2) Potri.005G191400 [exp] 233 / 2e-73 AT1G43670 609 / 0.0 FRUCTOSE INSENSITIVE 1, Arabidopsis thaliana cytosolic fructose-1,6-bisphosphatase, Inositol monophosphatase family protein (.1) Potri.002G069000 [exp] 229 / 5e-72 AT1G43670 619 / 0.0 FRUCTOSE INSENSITIVE 1, Arabidopsis thaliana cytosolic fructose-1,6-bisphosphatase, Inositol monophosphatase family protein (.1) Potri.008G063800 [exp] 79 / 5e-16 AT3G55800 629 / 0.0 sedoheptulose-bisphosphatase (.1) Potri.010G193300 [exp] 79 / 5e-16 AT3G55800 625 / 0.0 sedoheptulose-bisphosphatase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007061 [exp] 618 / 0 AT5G64380 549 / 0.0 Inositol monophosphatase family protein (.1) Lus10020433 [exp] 585 / 0 AT5G64380 528 / 0.0 Inositol monophosphatase family protein (.1) Lus10027748 [exp] 270 / 4e-87 AT3G54050 655 / 0.0 high cyclic electron flow 1 (.1.2) Lus10035545 [exp] 270 / 4e-87 AT3G54050 655 / 0.0 high cyclic electron flow 1 (.1.2) Lus10021115 [exp] 269 / 2e-86 AT3G54050 647 / 0.0 high cyclic electron flow 1 (.1.2) Lus10017195 [exp] 240 / 2e-75 AT3G54050 601 / 0.0 high cyclic electron flow 1 (.1.2) Lus10028580 [exp] 233 / 1e-73 AT1G43670 618 / 0.0 FRUCTOSE INSENSITIVE 1, Arabidopsis thaliana cytosolic fructose-1,6-bisphosphatase, Inositol monophosphatase family protein (.1) Lus10018885 [exp] 231 / 7e-73 AT1G43670 620 / 0.0 FRUCTOSE INSENSITIVE 1, Arabidopsis thaliana cytosolic fructose-1,6-bisphosphatase, Inositol monophosphatase family protein (.1) Lus10040228 [exp] 74 / 4e-14 AT3G55800 611 / 0.0 sedoheptulose-bisphosphatase (.1) Lus10028261 [exp] 72 / 2e-13 AT3G55800 611 / 0.0 sedoheptulose-bisphosphatase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0171 [poplar] [flax] Phospoesterase PF00316 [poplar] [flax] FBPase Fructose-1-6-bisphosphatase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.017G042900.1 pacid=42814209 polypeptide=Potri.017G042900.1.p locus=Potri.017G042900 ID=Potri.017G042900.1.v4.1 annot-version=v4.1 ATGCAATCATCTACCATACCCACATTCCCAACTTCACCTTTTCCTCCAAAAACCCTCCTTTTCTCTTCAAAAACCCAGTCTTTTCCATCAAAAAGCTCAC TTCTTGCCCAAAGTTGTCATCTTTTCAGGCCAAAAATGGCTTCTCTAAGTGGGTTTATTGTAAGATCACAAACGGGTACTTCTTCAAGTGGTGAAAAGGG GTTTTCTACTTTGAATGAATATATGGGGAAGGGAGGGATTGATGTGGGAGATGAGTTAGTGGTGTTGTATGATCATATACAATATGCCTCTAAGAGAATT GCAGCTCTTGTGGCTTCTCCTTTCAACTCTAGTCTCAGTAAACAGAGTAATTTTGCTGGAGGTGACAGTGGTTCAGGCAGAGACGCACCAAAACCTCTTG ATATTGTCTCAAATGAAATCATCTTATCTTCCCTTAAAAATTCTGGAAAAGTTGCTGTTATGGCTTCAGAAGAAGATGATGCTCCAGTTTGGATTAATGA TGATGGTCCATTTGTGGTGGTAACAGATCCTCTTGATGGGTCTCGAAATATCGATGCCTCCATTCCTACAGGAACAATTTTTGGGATATACAGGCGCCTT GTTGAACTGGATCATCTACCCCAGGAGGAAAAAGCTACGCTGAATTCATTGCAAAGTGGAGCCAAGCTTGTAGCTGCTGGGTATGTTCTCTATTCATCAG CCACTATACTGTGCACCAGCTTTGGTTCTGGAACGCATGCATTTACACTGGATCATTCCACAGGAGACTTCATTCAGACTCATATAGACATTAAGATTCC TCCTCGAGGGCAAATTTATTCTGTAAATGATGCGCGATACTTTGACTGGCCTGAAGGATTAAGGCAATATATTGACACTGTTAGACAGGGGAAAGGCAGA TACCCCAAGAAGTACTCTGCTCGTTATATATGTTCTCTCGTAGCTGATTTCCATCGAACGCTGTTGTATGGTGGTGTCGCAATGAATCCAAGGAACCATC TTCGTCTAGTTTATGAGGCAAATCCTCTTAGTTTTCTTGTTGAGCAAGCTGGGGGCAGAGGTTCTGATGGTAAAAGCAGGATTCTCTCTATGCAACCAGT CAAATTGCATCAAAGACTGCCTTTATTTTTAGGAAGTTTAGAAGACATGGAAGAGTTAGAGAGTTATGGAGATGTTCAACAGAAAGTAAACCCTGGATAT GAAGTTTGA
AA sequence Show only first row Show all	>Potri.017G042900.1 pacid=42814209 polypeptide=Potri.017G042900.1.p locus=Potri.017G042900 ID=Potri.017G042900.1.v4.1 annot-version=v4.1 MQSSTIPTFPTSPFPPKTLLFSSKTQSFPSKSSLLAQSCHLFRPKMASLSGFIVRSQTGTSSSGEKGFSTLNEYMGKGGIDVGDELVVLYDHIQYASKRI AALVASPFNSSLSKQSNFAGGDSGSGRDAPKPLDIVSNEIILSSLKNSGKVAVMASEEDDAPVWINDDGPFVVVTDPLDGSRNIDASIPTGTIFGIYRRL VELDHLPQEEKATLNSLQSGAKLVAAGYVLYSSATILCTSFGSGTHAFTLDHSTGDFIQTHIDIKIPPRGQIYSVNDARYFDWPEGLRQYIDTVRQGKGR YPKKYSARYICSLVADFHRTLLYGGVAMNPRNHLRLVYEANPLSFLVEQAGGRGSDGKSRILSMQPVKLHQRLPLFLGSLEDMEELESYGDVQQKVNPGY EV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G64380			Inositol monophosphatase famil...		Potri.017G042900 [exp]	0	1
AT2G21340			MATE efflux family protein (.1...		Potri.009G122600 [exp]	2.00	0.9539
AT1G11870		AtSRS, OVA7	ovule abortion 7, Seryl-tRNA s...		Potri.002G100300 [exp]	5.00	0.9560
AT1G09700		DRB1, HYL1	HYPONASTIC LEAVES 1, DSRNA-BIN...		Potri.017G126700 [exp]	5.00	0.9254
AT1G74590		ATGSTU10	glutathione S-transferase TAU ...		Potri.008G135300 [exp]	5.19	0.9384
AT2G13690			PRLI-interacting factor, putat...		Potri.007G109300 [exp]	5.29	0.9243
AT1G33780			Protein of unknown function (D...		Potri.019G073000 [exp]	5.47	0.9370
AT2G40760			Rhodanese/Cell cycle control p...		Potri.019G059400 [exp]	6.08	0.9204
AT1G52730			Transducin/WD40 repeat-like su...		Potri.001G174600 [exp]	6.32	0.9431
					Potri.019G045600 [exp]	6.92	0.9348
AT3G07310			Protein of unknown function (D...		Potri.002G247700 [exp]	8.36	0.9079

Compare expression of checked genes

Potri.017G042900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.