Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33630 675 / 0 EX1 EXECUTER1, Protein of unknown function (DUF3506) (.1), Protein of unknown function (DUF3506) (.2) AT1G27510 320 / 4e-100 Protein of unknown function (DUF3506) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G075000 [exp] 368 / 3e-118 AT1G27510 582 / 0.0 Protein of unknown function (DUF3506) (.1) Potri.012G079700 [exp] 367 / 5e-118 AT1G27510 599 / 0.0 Protein of unknown function (DUF3506) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007064 [exp] 782 / 0 AT4G33630 667 / 0.0 EXECUTER1, Protein of unknown function (DUF3506) (.1), Protein of unknown function (DUF3506) (.2) Lus10020435 [exp] 766 / 0 AT4G33630 655 / 0.0 EXECUTER1, Protein of unknown function (DUF3506) (.1), Protein of unknown function (DUF3506) (.2) Lus10027696 [exp] 346 / 5e-110 AT1G27510 635 / 0.0 Protein of unknown function (DUF3506) (.1) Lus10039967 [exp] 344 / 3e-109 AT1G27510 621 / 0.0 Protein of unknown function (DUF3506) (.1) Lus10042125 [exp] 231 / 2e-67 AT1G27510 358 / 7e-116 Protein of unknown function (DUF3506) (.1) Lus10002370 [exp] 95 / 6e-21 AT1G27510 164 / 2e-45 Protein of unknown function (DUF3506) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12014 [poplar] [flax] DUF3506 Domain of unknown function (DUF3506)
Representative CDS sequence Show only first row Show all	>Potri.017G043100.4 pacid=42813275 polypeptide=Potri.017G043100.4.p locus=Potri.017G043100 ID=Potri.017G043100.4.v4.1 annot-version=v4.1 ATGGCTTCTATTTCACCACCATCTCCATACAAACTCACCTTCACAACCAGGAAAAGACTTCCATACCCCTCTCCAAAACCACAATTCCCTTCTCGCTACC CTCTCTCTAGGCTTCTTTCTGATTCCACTCTCTGTCGCTGCACCGACTCTTCAAATAATCCTTCGATTCAGTGGCGATGGGACGCTGCGTTGCAAGCTGT GTTTAAGAATGCGATTAAGAGTTTCGATTCGTATATGAATCCAACTAAGAAGGGAGTTGGCAATAAAGGGGTTATGGAGGGAGAAACTGGAGAGGAGGAG GAGGAGGATGATGGAACTGTGTGGGATTGGGATCGCTGGAGATTGCATTTTGATCAAGTTGATGAACAACAACGCCTTGTTTCCCTTTTGAAGTCACAGT TAGGCAACGCTGTAAACAGAGAGGATTATGAAGATGCCGCTAGGCTTAAAGTGGCAATTGCAGCTGCAGCTTCAAATGATACTGTTGGCAGAGTGATGTC ACAGCTGAATAGAGCATTAGCACAAGAGCGTTACCTGGAGGCAGCTTTTTTACGAGATAATGCTGGTGCTGGATTGGTGGGATGGTGGTCTGGAATTTCT GAAGATGTTGATGATCCTTATGGTCTGATTATACGTATAACCGCAGAGCATGGAAGATATGTAGCAAGGAGTTACAGTCCACGACAGCTTGCTACAGCTG CAGTGGGGGTACCCCTTTTTGAGATCTTTCTTACAACGAATAAGAAAGGGGAATACAATGAACAGGCTGTGTATTTGAAGAGGAAAGGACTTTTCCAAGA TCCTTCTACCTTGCCCTCTAAAGCTTCGGGTGCCACCAGTCGCTTGAATCCACCAGGGCCAACTGAAGATAAAAGTGACCTATTTGTTGTGAGTACTGAA GAGGTAGATGATGCTGATGACACAGAAGATGGTTCTGATCTAGCTGAGGGACTGCCTGGCTTTCAGAACATTTTGAGAGATATGGTTCCTGGTGTGAAGG TCAAGGTTTTGAAAGTGACAACACCAGCAAAGGTGGACAAGGATTTTATATCTAAGGTGATAGAGCAAATAATTGATGAAGAAGATGATGAGAAGGATAT TGAGTTAGAAAGTGAGGAAGCAGAAGATGATGGCAAAGGTGAAAGTGACCAGGAAAGAGATGAAATTGAAATGGATGCTGGTCGTGGGATCATTGATGAT GAAAATCAAAGTGAAATTGCAGTTAAAGTTGTTGTTGGGGGTCTTGCACAGAAACTTTCAGGCAGCGTTCCTGCAAAAGGCTCCATTAGAGTACCAGCTA AGCTAGACAGAAAGGGACGCAAGTCATTTTCCTTTTCTATAGAGAAAGAAGTAAACCAACAAAATGCCAAGGAACTGGCTTCAGCGGACAGAAAAGCTAA GCTTCGAGGTCAACGCAGTGTGGACCATGTAATGTTTGATCTAGCCAAATTCATTGGTAGTGAGAAGATACCCTTGAAGGTGCTGAAAGATGTTGGTGAA CTAATAAGTCTTACCCTCAGTCAGGCTCAAAACCGTCAACCACTGTCTGGATCAACAACTTTTCATCGAATTGAGATATCAACATCTCCTGATCCTTTAA ATGGACTATATATTGGTGCACATGGGCTGTACACCTCAGAAGTCATACACCTGCAACGTAAATTTGGTCAGTGGCAAGAAGATCATGGGACTAAGGAGTC CTCTAATCTAGAGTTCTATGAATATGTGGAAGCTGTTAAATTAACTGGAGATCCTTATGTACCTGCTGGACAGGTGGCATTTCGTGCTAAGGTTGGGAAA AGATATCAGCTCCCCCATAGAGGCATCATTCCTGAAGAATTTGGAGTGATTGCTCGATATAAAGGACAAGGGAAGCTTGCTGAGCCAGGATTCCGAAATC ATCGATGGGTTGACGGTGAACTTGTTATTCTTGATGGAAAGTACATTAAAGGGGGGCCTGTTGTTGGATTTGTGTACTGGGCTCCTGAATATCACTTCTT GGTGTTCTTCAATCGTCTGAGGCTTCAACAGTAG
AA sequence Show only first row Show all	>Potri.017G043100.4 pacid=42813275 polypeptide=Potri.017G043100.4.p locus=Potri.017G043100 ID=Potri.017G043100.4.v4.1 annot-version=v4.1 MASISPPSPYKLTFTTRKRLPYPSPKPQFPSRYPLSRLLSDSTLCRCTDSSNNPSIQWRWDAALQAVFKNAIKSFDSYMNPTKKGVGNKGVMEGETGEEE EEDDGTVWDWDRWRLHFDQVDEQQRLVSLLKSQLGNAVNREDYEDAARLKVAIAAAASNDTVGRVMSQLNRALAQERYLEAAFLRDNAGAGLVGWWSGIS EDVDDPYGLIIRITAEHGRYVARSYSPRQLATAAVGVPLFEIFLTTNKKGEYNEQAVYLKRKGLFQDPSTLPSKASGATSRLNPPGPTEDKSDLFVVSTE EVDDADDTEDGSDLAEGLPGFQNILRDMVPGVKVKVLKVTTPAKVDKDFISKVIEQIIDEEDDEKDIELESEEAEDDGKGESDQERDEIEMDAGRGIIDD ENQSEIAVKVVVGGLAQKLSGSVPAKGSIRVPAKLDRKGRKSFSFSIEKEVNQQNAKELASADRKAKLRGQRSVDHVMFDLAKFIGSEKIPLKVLKDVGE LISLTLSQAQNRQPLSGSTTFHRIEISTSPDPLNGLYIGAHGLYTSEVIHLQRKFGQWQEDHGTKESSNLEFYEYVEAVKLTGDPYVPAGQVAFRAKVGK RYQLPHRGIIPEEFGVIARYKGQGKLAEPGFRNHRWVDGELVILDGKYIKGGPVVGFVYWAPEYHFLVFFNRLRLQQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33630		EX1	EXECUTER1, Protein of unknown ...		Potri.017G043100 [exp]	0	1
AT1G03160		FZL	FZO-like (.1.2)		Potri.005G209200 [exp]	3.46	0.9334
AT1G21650		SECA2	Preprotein translocase SecA fa...		Potri.002G078000 [exp]	4.24	0.9118
AT1G32690			unknown protein		Potri.001G141600 [exp]	4.47	0.9118
AT5G04140		GLS1, GLUS, GLU...	FERREDOXIN-DEPENDENT GLUTAMATE...		Potri.006G038400 [exp]	5.00	0.9142	Pt-GLU1.2
AT5G49580			Chaperone DnaJ-domain superfam...		Potri.010G148900 [exp]	7.48	0.9074
AT4G02260		AT-RSH1, RSH1, ...	RELA-SPOT HOMOLOG 1, RELA/SPOT...		Potri.014G126700 [exp]	11.48	0.9245	RSH1.2
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Potri.002G068400 [exp]	12.12	0.9137
AT1G32200		ACT1, ATS1	ACYLTRANSFERASE 1, phospholipi...		Potri.001G136600 [exp]	12.64	0.9168
AT1G68570			Major facilitator superfamily ...		Potri.010G126300 [exp]	13.26	0.8684
AT1G78915			Tetratricopeptide repeat (TPR)...		Potri.008G003800 [exp]	15.19	0.9188

Compare expression of checked genes

Potri.017G043100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.