Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33625 237 / 4e-80 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G115800 [exp] 239 / 1e-80 AT4G33625 173 / 5e-55 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007070 [exp] 253 / 3e-86 AT4G33625 261 / 2e-89 unknown protein Lus10020442 [exp] 251 / 2e-85 AT4G33625 256 / 1e-87 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08507 [poplar] [flax] COPI_assoc COPI associated protein
Representative CDS sequence Show only first row Show all	>Potri.017G043200.6 pacid=42814321 polypeptide=Potri.017G043200.6.p locus=Potri.017G043200 ID=Potri.017G043200.6.v4.1 annot-version=v4.1 ATGGCAGAGAGAGAAAGAGAGACCTTACCTCTGCCTCCGGCTCTTCCTCGAGCATCGTCATCAAGCTCCAGAGCAAGAGCCACCGCCTTAGTTCGACCCG GACCGGACCCGTTGTTAGTAATTTGTAGGTGTTTCAGCTTTGTAACTTCACTCACTGCGATTCTTTGTGTTGCCGTCAACGTTCTCTCCGCCGTTAGATC CTTTAAAGACGGATCTGATGTTTTTGATGGAATATTCAGGTGTTATGCGGTGGTAATTGCGTTTATTGTGGTGGTTGCGGAGACGGAGTGGGGATTTGTT ATTAAGTTCTGGAAGATATTGGAGTATTGGGCAGGGAGGGGCATGCTGCAAATCTTTGTTGCAGTAATGACGAGAGCTTTCCCTGACTATTCATCAAACC AGAAGGAGCTTGTTCTTCTACAAAATATAGCTAGCTATATGCTCCTTGCTTGTGGTCTAGTTTATGTTATTTCAGGAATTCTGTGCATTGGCTTTCTCAA ACGGTCTCGTCAGAAGAAAGAAACTACGAGGGAGCAGGCTGTCAAGGATCTGGAGGAATTAGAGCGGCGGAGGGAGGAGCTCGAGCAATTGCTAATCGCA GAAAGGATTTGA
AA sequence Show only first row Show all	>Potri.017G043200.6 pacid=42814321 polypeptide=Potri.017G043200.6.p locus=Potri.017G043200 ID=Potri.017G043200.6.v4.1 annot-version=v4.1 MAERERETLPLPPALPRASSSSSRARATALVRPGPDPLLVICRCFSFVTSLTAILCVAVNVLSAVRSFKDGSDVFDGIFRCYAVVIAFIVVVAETEWGFV IKFWKILEYWAGRGMLQIFVAVMTRAFPDYSSNQKELVLLQNIASYMLLACGLVYVISGILCIGFLKRSRQKKETTREQAVKDLEELERRREELEQLLIA ERI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33625			unknown protein		Potri.017G043200 [exp]	0	1
AT1G60710		ATB2	NAD(P)-linked oxidoreductase s...		Potri.014G147700 [exp]	1.41	0.7843	Pt-ATB2.1
AT4G36195			Serine carboxypeptidase S28 fa...		Potri.007G015300 [exp]	3.16	0.7201
AT1G08830		CSD1	copper/zinc superoxide dismuta...		Potri.005G044400 [exp]	8.71	0.6991	CUZN-SOD.1
AT5G23810		AAP7	amino acid permease 7 (.1.2)		Potri.011G167000 [exp]	10.39	0.7070	PtrAAP10
AT2G45140		PVA12	plant VAP homolog 12 (.1)		Potri.014G060900 [exp]	13.41	0.6463	Pt-VAP27.5
AT2G35680			Phosphotyrosine protein phosph...		Potri.002G136700 [exp]	22.00	0.6638
AT5G41700		ATUBC8, UBC8	ARABIDOPSIS THALIANA UBIQUITIN...		Potri.019G131400 [exp]	22.97	0.6300	UBC.10
AT4G23630		RTNLB1, BTI1	Reticulan like protein B1, VIR...		Potri.003G133600 [exp]	25.39	0.6349
AT5G17165			unknown protein		Potri.013G081700 [exp]	25.41	0.6479
AT4G19180			GDA1/CD39 nucleoside phosphata...		Potri.015G079900 [exp]	27.92	0.6803

Compare expression of checked genes

Potri.017G043200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.