Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14110 311 / 8e-110 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G043900 [exp] 380 / 1e-136 AT2G14110 320 / 1e-112 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007071 [exp] 312 / 7e-110 AT2G14110 308 / 1e-108 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10020444 [exp] 272 / 4e-94 AT2G14110 271 / 1e-93 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [poplar] [flax] HAD PF13419 [poplar] [flax] HAD_2 Haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Potri.017G043700.1 pacid=42814517 polypeptide=Potri.017G043700.1.p locus=Potri.017G043700 ID=Potri.017G043700.1.v4.1 annot-version=v4.1 ATGGGAGACGAGACGGTGAAAAACGATGCTTTGCAAGTTATTGGAATGTTTCAAGTGCTGCCTAGATTGGTCGTCTTCGATCTAGATTACACTCTCTGGC CTTTCTATTGCGAATGTCGATCCAAGCGTGAAATGCCATCCTTGTTTCCCCAAGCTAAAGGCATATTATATGCACTCAAGGAAAAGGGGATTGACATGGC CATTGCTTCTAGATCACCAACCTCAGATATTGCAAAGACATTTATTGACAAACTAAGTCTCAAGCCAATGTTTGTAGCACAGGAAATATTTTCCAGTAGG ACTCACAAGATAGATCATTTCCAGATGATTCATACGAGGACTGGGATACCCTTTAACTCCATGCTTTTTTTTGATGATGAGAATAGGAACATTCAATCGG TTTCAAAAATGGGAGTAACTAGCATTCTGGTTGGTGATGGGGTCAATCTTGGAGCACTAAGACAGGGGCTCTCAGAATTTTCTCAAAATGCTAGTAAATC TGAGAAGAACAAGCAGAGGTGGCAGAAATATTCACAAAATCCAAATTCATCTGAGAAGAAAGATGAAGATTGA
AA sequence Show only first row Show all	>Potri.017G043700.1 pacid=42814517 polypeptide=Potri.017G043700.1.p locus=Potri.017G043700 ID=Potri.017G043700.1.v4.1 annot-version=v4.1 MGDETVKNDALQVIGMFQVLPRLVVFDLDYTLWPFYCECRSKREMPSLFPQAKGILYALKEKGIDMAIASRSPTSDIAKTFIDKLSLKPMFVAQEIFSSR THKIDHFQMIHTRTGIPFNSMLFFDDENRNIQSVSKMGVTSILVGDGVNLGALRQGLSEFSQNASKSEKNKQRWQKYSQNPNSSEKKDED

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G14110			Haloacid dehalogenase-like hyd...		Potri.017G043700 [exp]	0	1
					Potri.013G057766 [exp]	2.00	0.8268
AT2G28060			5'-AMP-activated protein kinas...		Potri.009G008700 [exp]	4.00	0.7824
AT1G50940		ETFALPHA	electron transfer flavoprotein...		Potri.011G135600 [exp]	5.29	0.8115
AT1G52280		AtRABG3d	RAB GTPase homolog G3D (.1)		Potri.003G053400 [exp]	6.00	0.8091
AT3G04830			Protein prenylyltransferase su...		Potri.005G051300 [exp]	6.70	0.8188
AT4G31130			Protein of unknown function (D...		Potri.006G280900 [exp]	9.69	0.7514
					Potri.003G011000 [exp]	12.00	0.7511
AT2G21600		ATRER1B	endoplasmatic reticulum retrie...		Potri.005G228900 [exp]	12.64	0.7584	RER1.4
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.005G146800 [exp]	13.37	0.8362
AT1G07950		MED22B	Surfeit locus protein 5 subuni...		Potri.008G080700 [exp]	13.96	0.7840

Compare expression of checked genes

Potri.017G043700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.