Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14110 320 / 1e-112 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G043700 [exp] 380 / 1e-136 AT2G14110 311 / 9e-110 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007071 [exp] 317 / 2e-111 AT2G14110 308 / 1e-108 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10020444 [exp] 279 / 3e-96 AT2G14110 271 / 1e-93 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [poplar] [flax] HAD PF12689 [poplar] [flax] Acid_PPase Acid Phosphatase
Representative CDS sequence Show only first row Show all	>Potri.017G043900.3 pacid=42813155 polypeptide=Potri.017G043900.3.p locus=Potri.017G043900 ID=Potri.017G043900.3.v4.1 annot-version=v4.1 ATGTTTTCTTCGTCGAACAAATACCAAACGCTTAAAATTCTCACAAATTCTTTTGGAAAGGCAAAAGCAAGCAGAAAGATGGGAGACGAGACGGTGAAAA ACGATGCTTTGCAAATTATTGGAATGTTTCAAGTGCTGCCTAGATTGGTCGTCTTCGATCTAGATTACACTCTCTGGCCTTTCTATTGCGATTGTCGCTC AAAGCGTGAAATGCCATCCTTGTTTCCCCAAGCTAAAGGCATATTATATGCACTCAAGGAAAAGGGGATTGACATGGCCATTGCTTCTAGATCATCAACC TCAGATATTGCAAAGACATTTATTGACAAACTAAGTCTCAAGCCAATGTTTGTAGCACAGGAAATATTTGCCAGTTGGACTCACAAGACAGATCATTTCC AGAGGATTCATACGAGGACTGGGATACCCTTTAACTCCATGCTTTTTTTTGATGATGAGGATAGGAACATTCAATCGGTTTCAAAAATGGGAGTAACTAG CATTCTGGTTGGTGATGGGGTCAATCTTGGAGCACTAAGACAGGGGCTCACAGAATTTTCTCAAAATGCAAGTAAATCTGAGAAGAACAAGCAGAGGTGG CAGAAATATTCACAAAATCCAAGTTCATCTGAGAAGAAAGATGAAGATTGA
AA sequence Show only first row Show all	>Potri.017G043900.3 pacid=42813155 polypeptide=Potri.017G043900.3.p locus=Potri.017G043900 ID=Potri.017G043900.3.v4.1 annot-version=v4.1 MFSSSNKYQTLKILTNSFGKAKASRKMGDETVKNDALQIIGMFQVLPRLVVFDLDYTLWPFYCDCRSKREMPSLFPQAKGILYALKEKGIDMAIASRSST SDIAKTFIDKLSLKPMFVAQEIFASWTHKTDHFQRIHTRTGIPFNSMLFFDDEDRNIQSVSKMGVTSILVGDGVNLGALRQGLTEFSQNASKSEKNKQRW QKYSQNPSSSEKKDED

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G14110			Haloacid dehalogenase-like hyd...		Potri.017G043900 [exp]	0	1
					Potri.019G129532 [exp]	3.00	0.7941
AT3G53820	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.006G089301 [exp]	3.16	0.8153
AT3G62220			Protein kinase superfamily pro...		Potri.014G114200 [exp]	3.60	0.8190
AT5G60760			P-loop containing nucleoside t...		Potri.009G009200 [exp]	5.29	0.7908
AT3G05640			Protein phosphatase 2C family ...		Potri.010G006100 [exp]	5.91	0.7857
AT3G11800			unknown protein		Potri.004G146800 [exp]	7.07	0.7083
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Potri.011G101700 [exp]	12.00	0.7321
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Potri.006G219300 [exp]	13.19	0.7267
AT5G47770		FPS1	farnesyl diphosphate synthase ...		Potri.006G003400 [exp]	13.26	0.7644	Pt-FPS1.2
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Potri.017G087800 [exp]	19.59	0.7113

Compare expression of checked genes

Potri.017G043900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.