Plant FIBer expression Database

Potri.017G044300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G014056
[exp]
288 / 3e-86 ND /
Potri.001G038975
[exp]
151 / 5e-41 AT1G71770 45 / 5e-05 poly(A)-binding protein 5 (.1), poly(A)-binding protein 5 (.2)
Potri.006G160950
[exp]
126 / 2e-34 ND /
Potri.003G206401
[exp]
48 / 2e-06 ND /
Potri.015G123750
[exp]
49 / 3e-06 ND /
Potri.005G221050
[exp]
42 / 0.0002 ND /
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0221 RRM PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
CL0221 PF14111 DUF4283 Domain of unknown function (DUF4283)
Representative CDS sequence
>Potri.017G044300.2 pacid=42813930 polypeptide=Potri.017G044300.2.p locus=Potri.017G044300 ID=Potri.017G044300.2.v4.1 annot-version=v4.1
ATGCTCCCAACCAAAACACTCCCCCTTTTGTCTATCATCCCCTCCTCTGCAACCCAGGTCTTAGTAACCTCCTTCAAACCTCCCTCTTACAATCCAACCC
CACAAACACCTGCAAACGTCCCTCTTAAACATACACAACACCCCCCTCTTCACCCTGCCACCCTGAAATTTTTGCAACCTATGTGTTACACAAACAACAG
CCAAAACAACAAACACTTACCTAACACAACTCCCACTCCCTCTGTTTCTACTAAGTTTTATTTTGAACGTTTCCCGTCTTGGCTTGATTACCAAGATCTC
AAAAAAGCTTTTTCAAAGATTAGTCTTGTCACCAACCTCTTTGTTTCCAGGAAAAAAACAAAAATAGGGAGACGGTTTGGTTTTGTAACTTTCTTCTCCC
ATTTAGAAGCTACAGACCTTTGTGATATATTGAACCTTATATGGTTTGACTCTTTCAAAATTCGTGCAAACCTAGCACGATTTCAAACACCTTCAGATTC
CAGGGAAAAGACAGCCCTCACCACAAAGCCAGAAACCAAAATCTCGCCCAAACTAGCCCTTAGAGACAACAGGACCTTTGTTGAAGCTCTTTTAGTCCAA
CAACCATCAAAGAAGACTGTGGTGTATGAGTCTACACAGGATGACAAGGAATGGCTATTGAGAAGTTTAGTCGGTTCTATAGCCATAGAAGTGGACTATG
CACAATTGGAGCATATGGTTTTGAAAACTGTTAAGAAGGCAATTGGATTTCGCTTCCTTGGAGCAAGCCAAACAGTTATCACCTTTACAGACAAAGAGAC
CATGGAGAAAGAATTAATAAACAGTTGCTCTGCCTTGGCAAACTACTTCTCTAGTATCAAACCATGGAAGAGGGAAGTAAAAGCAGTAAACAGATTTGCT
TGGGTGTCTATTCTGGGACTTCCTCTGATTGCATGGAACCGCAGATGTATTGAATTCATGGTAGAAGGTGTAGGCAAGATGATTGGTTACGACATTACAA
GTGTGAGTCAAGGTTCACTTATGGGAGTCAAGGTGCTTCTGAGCACAACCTCTTTCACGACTTTAAACAAGCAGCTTTCAATGATTCTAGACGGAGAGGA
ATTTGATATATCAGTCATGGAAATGAAGCCCGGTTTTAGCCCCCTGCTTACCATAATTAAATACTCAATGGATACATCAGGCACTGAAGAATCAGATGAA
GAGACATGCAGTAAAATTACACCTCCAGAAGAGTTTTCGTCGGCCAGTATAAATGAACCAGAAGCTGACTGGACCTCACCAGAGCAACAAGACAAGGACA
TGCAAAATGACCCCTCTCTCATTCTCTGCACAAGGTACACTGAATTACCCAGCAACCTAGACCAATCTGACACAACATACAAAACCTTCTGCCTTTTTCC
TGAAACTAAGGAAACACACAAGCTACAGACAAAAAACCAACAACTACACACCGCCTCTTACCAATCCCAATCGTCCTCTATAGAGCCATGCTATGACACC
ATTAGGGAAAAAATACAAGTGGCAGAAACCAGCTACAGCAGCCCAGATGACTCAGCAGTATCCTTTTCAAGAGTGGGCCTCGATAAAAAACAAACACACA
CTAAAGCCTCCTCAGCCCAGGTTATAAGGCCTACCCCAAAACTAACGAGACACATGATACTAGACCAAAATCAGAGCCAGAATACACATCAGCAATCTTT
CTCTGCATTCATACGTGACCTGGCAGAACCACAAGAAGTAGTGGAAATGGAGTTGGAAGGAAAAATAAAAGATAAGAAGCTTAGAAGAACTAGAGGGCTT
GCACCTAAATCTTCATTCAGCAAAAGGAAGAATATGATGAAAGTTAGATCGTTTGCAGCTCATATTTCTGATGGAGCACCCAACCTTCTTGCAATGAAGG
TAACCAGCACCCAAAATAACACACCTCTACAAGGCACCATGTCATCCCCTGTTATCGAGTCATCCGGCGTTGGAAAGAACCATAACTATGCCTCCATGGA
TGATGAAACCAATGGCAAGCATCTCCATCTACCACCCCTGTTGAACCCTCAAAGCAGCCCACAAACCTCTGCAGACGCGACCAATGAAAACGCAAATGGG
AATAGCCACAAAATAAGAAAACTGAAGTTGCTGCAAGCTAGTGGTAGTGTTGCTAACACGATGGAGGATTGTGATTCTTCAGACTCCTTAAACTTAGGAA
TCCAACAAGGAAATATTCGGTTTCAAATCACATGTATGAAGCATCAAGACAATGGGTTTGACAGTGAAAGGGAGACTCAAGAAATAATACAAGATGTTGT
GGCTCTAGGTCTGGGAAACCCGCAAGAACTAAAAGGGTACGAAGAAGGAATAATGAGAAACATTGAAAGAGAAGTAGATGAGTGGACATCAGTTAACCAG
TTGTAA
AA sequence
>Potri.017G044300.2 pacid=42813930 polypeptide=Potri.017G044300.2.p locus=Potri.017G044300 ID=Potri.017G044300.2.v4.1 annot-version=v4.1
MLPTKTLPLLSIIPSSATQVLVTSFKPPSYNPTPQTPANVPLKHTQHPPLHPATLKFLQPMCYTNNSQNNKHLPNTTPTPSVSTKFYFERFPSWLDYQDL
KKAFSKISLVTNLFVSRKKTKIGRRFGFVTFFSHLEATDLCDILNLIWFDSFKIRANLARFQTPSDSREKTALTTKPETKISPKLALRDNRTFVEALLVQ
QPSKKTVVYESTQDDKEWLLRSLVGSIAIEVDYAQLEHMVLKTVKKAIGFRFLGASQTVITFTDKETMEKELINSCSALANYFSSIKPWKREVKAVNRFA
WVSILGLPLIAWNRRCIEFMVEGVGKMIGYDITSVSQGSLMGVKVLLSTTSFTTLNKQLSMILDGEEFDISVMEMKPGFSPLLTIIKYSMDTSGTEESDE
ETCSKITPPEEFSSASINEPEADWTSPEQQDKDMQNDPSLILCTRYTELPSNLDQSDTTYKTFCLFPETKETHKLQTKNQQLHTASYQSQSSSIEPCYDT
IREKIQVAETSYSSPDDSAVSFSRVGLDKKQTHTKASSAQVIRPTPKLTRHMILDQNQSQNTHQQSFSAFIRDLAEPQEVVEMELEGKIKDKKLRRTRGL
APKSSFSKRKNMMKVRSFAAHISDGAPNLLAMKVTSTQNNTPLQGTMSSPVIESSGVGKNHNYASMDDETNGKHLHLPPLLNPQSSPQTSADATNENANG
NSHKIRKLKLLQASGSVANTMEDCDSSDSLNLGIQQGNIRFQITCMKHQDNGFDSERETQEIIQDVVALGLGNPQELKGYEEGIMRNIEREVDEWTSVNQ
L

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.017G044300
[exp]
0 1
AT4G24060 DOF AtDof4,6 Dof-type zinc finger DNA-bindi... Potri.001G086400
[exp]
1.41 0.8125 Pt-DOF4.2
AT2G42010 PLDBETA1 phospholipase D beta 1 (.1) Potri.014G074700
[exp]
3.46 0.8067
AT5G28740 Tetratricopeptide repeat (TPR)... Potri.011G043812
[exp]
4.24 0.7960
AT1G05830 SDG30, ATX2 SET DOMAIN PROTEIN 30, trithor... Potri.014G146300
[exp]
8.71 0.7183 SDG938
AT5G50170 C2 calcium/lipid-binding and G... Potri.015G083500
[exp]
9.32 0.7499
Potri.017G152701
[exp]
10.81 0.8044
AT1G63245 CLE14 CLAVATA3/ESR-RELATED 14 (.1) Potri.002G228000
[exp]
15.29 0.7631
Potri.004G212751
[exp]
15.74 0.8012
AT4G27290 S-locus lectin protein kinase ... Potri.011G037000
[exp]
18.00 0.7718
AT5G17910 unknown protein Potri.019G044500
[exp]
22.02 0.7973

Potri.017G044300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.