Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22540 201 / 3e-65 MADS AGL22, SVP SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) AT4G24540 186 / 3e-59 MADS AGL24 AGAMOUS-like 24 (.1) AT5G62165 108 / 3e-29 MADS FYF, AGL42 FOREVER YOUNG FLOWER, AGAMOUS-like 42 (.1.2.3.4.5) AT3G57230 107 / 1e-28 MADS AGL16 AGAMOUS-like 16 (.1.2) AT2G42830 107 / 4e-28 MADS AGL5, SHP2 SHATTERPROOF 2, AGAMOUS-like 5, K-box region and MADS-box transcription factor family protein (.1.2) AT4G37940 106 / 5e-28 MADS AGL21 AGAMOUS-like 21 (.1) AT4G09960 104 / 2e-27 MADS AGL11, STK SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) AT4G18960 104 / 3e-27 MADS AG AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) AT4G22950 102 / 6e-27 MADS AGL19 AGAMOUS-like 19 (.1) AT3G58780 103 / 1e-26 MADS AGL1, SHP1 SHATTERPROOF 1, AGAMOUS-like 1, K-box region and MADS-box transcription factor family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G044200 [exp] 392 / 1e-140 AT2G22540 206 / 9e-67 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Potri.007G115200 [exp] 318 / 2e-111 AT2G22540 189 / 3e-60 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Potri.007G115100 [exp] 316 / 2e-110 AT2G22540 186 / 1e-58 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Potri.007G115000 [exp] 273 / 2e-93 AT2G22540 181 / 9e-57 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Potri.007G010800 [exp] 226 / 7e-75 AT2G22540 329 / 3e-115 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Potri.002G105600 [exp] 224 / 2e-74 AT2G22540 288 / 3e-99 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Potri.005G155300 [exp] 213 / 9e-70 AT2G22540 234 / 8e-78 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Potri.002G109601 [exp] 112 / 1e-30 AT3G57230 299 / 1e-103 AGAMOUS-like 16 (.1.2) Potri.005G150501 [exp] 113 / 2e-30 AT3G57230 322 / 8e-112 AGAMOUS-like 16 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025719 [exp] 192 / 5e-62 AT2G22540 286 / 4e-99 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Lus10035942 [exp] 194 / 9e-61 AT2G22540 307 / 1e-104 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Lus10014143 [exp] 108 / 8e-29 AT4G22950 212 / 6e-69 AGAMOUS-like 19 (.1) Lus10006715 [exp] 105 / 1e-27 AT4G22950 223 / 1e-73 AGAMOUS-like 19 (.1) Lus10005080 [exp] 103 / 2e-26 AT3G02310 372 / 1e-131 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Lus10007100 [exp] 100 / 9e-26 AT3G57230 226 / 4e-75 AGAMOUS-like 16 (.1.2) Lus10034371 [exp] 100 / 2e-25 AT3G02310 364 / 3e-128 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Lus10039580 [exp] 100 / 2e-25 AT5G13790 246 / 2e-81 AGAMOUS-like 15 (.1) Lus10020477 [exp] 97 / 2e-25 AT4G37940 195 / 4e-64 AGAMOUS-like 21 (.1) Lus10008264 [exp] 100 / 4e-25 AT4G09960 328 / 3e-114 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [poplar] [flax] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Potri.017G044500.3 pacid=42814442 polypeptide=Potri.017G044500.3.p locus=Potri.017G044500 ID=Potri.017G044500.3.v4.1 annot-version=v4.1 ATGACTCGCAAGAAAATCCCGATCAAGAAGATAGACAACACAACTGCAAGGCAAGTCAGTTTCTCAAAGAGGAGAAGAGGGCTCTTCAAGAAAGCTTGCG AGCTCTCAATTCTATGTGATGCTGAGATTGCTCTCATGGTGTTTTCTGCAACTGGAAAGTTTTTTGAGTACTCAAACTCAAGCATTGGGCAAGTGATAGA AAGGCGTAATCTGCATCCCAAAAACCTTGACAAATTTAGTCAACCATCGGTTGAGCTTCAGCTTGATAGTGCTGTGCATGCCATGTTGAACAAGGAAATA GCAGAGAAAACCCGTGAACTGAGGCGAACAAGGGGAGAAGACCTGCAGGGACTGAACATGGAAGAATTAGAAAAATTAGAAAAATTAATTGAAGGAAGCT TGTGTCGTGTCATGGAAACAAAGGGAGAAAAAATTCTAAAGGAGGTCGATGCTCTCAAGTCCAAGGAGCAGCAATTAATAGAAGAGAACCAGCGATTGAC GCAGAGATTAATGAATTTATCAAAGGGACAAGGGCATTTGCTCGAACAAGGCCAGTCATCAGATTCTATGGTGACCAATATCAGCAGCAACTCAGCTTAT CCTCGTCAGGACTACGACAACTCTTGTTCTTTTCTTACACTGGGGTTACCTTTTCCTGATTGA
AA sequence Show only first row Show all	>Potri.017G044500.3 pacid=42814442 polypeptide=Potri.017G044500.3.p locus=Potri.017G044500 ID=Potri.017G044500.3.v4.1 annot-version=v4.1 MTRKKIPIKKIDNTTARQVSFSKRRRGLFKKACELSILCDAEIALMVFSATGKFFEYSNSSIGQVIERRNLHPKNLDKFSQPSVELQLDSAVHAMLNKEI AEKTRELRRTRGEDLQGLNMEELEKLEKLIEGSLCRVMETKGEKILKEVDALKSKEQQLIEENQRLTQRLMNLSKGQGHLLEQGQSSDSMVTNISSNSAY PRQDYDNSCSFLTLGLPFPD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G22540	MADS	AGL22, SVP	SHORT VEGETATIVE PHASE, AGAMOU...		Potri.017G044500 [exp]	0	1
AT2G22540	MADS	AGL22, SVP	SHORT VEGETATIVE PHASE, AGAMOU...		Potri.017G044200 [exp]	10.48	0.7820
AT2G41900	C3HZnF	OXS2	OXIDATIVE STRESS 2, CCCH-type ...		Potri.009G061000 [exp]	12.12	0.6949
AT1G11940			Core-2/I-branching beta-1,6-N-...		Potri.002G227000 [exp]	13.52	0.6124
AT5G07360			Amidase family protein (.1.2)		Potri.015G109400 [exp]	22.11	0.7094
AT3G02630			Plant stearoyl-acyl-carrier-pr...		Potri.010G179400 [exp]	29.69	0.6650
AT1G54200			unknown protein		Potri.006G222700 [exp]	40.95	0.6791
AT5G59845			Gibberellin-regulated family p...		Potri.014G020100 [exp]	45.19	0.6839
AT3G50620			P-loop containing nucleoside t...		Potri.007G042100 [exp]	52.82	0.5915
AT4G01970		RS4, ATSTS	raffinose synthase 4, stachyos...		Potri.002G193700 [exp]	61.60	0.6591
AT1G70100			unknown protein		Potri.008G192800 [exp]	62.56	0.6416

Compare expression of checked genes

Potri.017G044500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.