Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64360 189 / 3e-53 EIP9 EMF1-Interacting Protein 1, Chaperone DnaJ-domain superfamily protein (.1.2.3.4) AT5G09540 161 / 5e-45 Chaperone DnaJ-domain superfamily protein (.1) AT1G62970 150 / 4e-38 Chaperone DnaJ-domain superfamily protein (.1) AT2G01710 130 / 2e-33 Chaperone DnaJ-domain superfamily protein (.1) AT5G37380 88 / 3e-18 Chaperone DnaJ-domain superfamily protein (.1.2.3.4.5) AT4G19570 84 / 6e-17 Chaperone DnaJ-domain superfamily protein (.1) AT2G05230 82 / 5e-16 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G05250 82 / 5e-16 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G25560 79 / 3e-15 DNAJ heat shock N-terminal domain-containing protein (.1) AT4G19590 73 / 9e-14 Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G114800 [exp] 810 / 0 AT5G09540 155 / 9e-43 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G156100 [exp] 149 / 1e-39 AT2G01710 313 / 9e-106 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G105500 [exp] 141 / 5e-37 AT2G01710 308 / 1e-103 Chaperone DnaJ-domain superfamily protein (.1) Potri.014G165600 [exp] 91 / 7e-19 AT2G05230 730 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.001G057200 [exp] 91 / 1e-18 AT5G53150 318 / 1e-97 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G020200 [exp] 89 / 2e-18 AT5G53150 574 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.013G029500 [exp] 89 / 5e-18 AT3G04980 524 / 6e-167 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.012G001100 [exp] 87 / 1e-17 AT5G53150 570 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.002G221000 [exp] 86 / 3e-17 AT2G05230 696 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037698 [exp] 251 / 2e-73 AT5G64360 184 / 9e-51 EMF1-Interacting Protein 1, Chaperone DnaJ-domain superfamily protein (.1.2.3.4) Lus10015692 [exp] 242 / 2e-71 AT5G64360 179 / 5e-50 EMF1-Interacting Protein 1, Chaperone DnaJ-domain superfamily protein (.1.2.3.4) Lus10015891 [exp] 151 / 2e-40 AT2G01710 310 / 2e-104 Chaperone DnaJ-domain superfamily protein (.1) Lus10009275 [exp] 150 / 7e-40 AT2G01710 300 / 2e-100 Chaperone DnaJ-domain superfamily protein (.1) Lus10001744 [exp] 96 / 1e-20 AT2G05250 322 / 5e-103 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10001171 [exp] 93 / 6e-20 AT2G05250 308 / 2e-98 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10006380 [exp] 90 / 2e-18 AT5G35753 420 / 2e-136 Domain of unknown function (DUF3444) (.1) Lus10008983 [exp] 89 / 4e-18 AT5G53150 509 / 3e-172 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10012334 [exp] 89 / 4e-18 AT5G35753 414 / 3e-134 Domain of unknown function (DUF3444) (.1) Lus10028842 [exp] 86 / 3e-17 AT5G53150 498 / 3e-167 DNAJ heat shock N-terminal domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.017G044600.10 pacid=42814085 polypeptide=Potri.017G044600.10.p locus=Potri.017G044600 ID=Potri.017G044600.10.v4.1 annot-version=v4.1 ATGGACGGTAGCAGCAGCGGAGGCGGAAACGGTTACAGAGTAGAAGCAGAGCGGTGGTTAACTATATCAGAGAAACTCTTAGCAGCACGTGACTTGCACG GGGCTAAGAGCTTCGCGATCCGAGCCAGAGAATCCGACCCGAGACTCTACGAATTCTCCGATCAAATCATCGCCGTTGCCGACACTCTCCTCGCCGGAGA GTTACGCGTCGAGAACAATCACCACTATGATTACTATATGATTCTCCAACTCGGTCGCTTGACCCAGGATCTCGAACTCATTACGGATCAGTATCGGAAG CTCGCCTTGTTGCTCAACCCGACGAGGAACCGGCTGCTCTTCGCTGATCAGGCGTTCAAGCTTGTGTCGGAGGCCTGGCTCGTGCTTTCGAATCCTGCTA AGAAGGCAATGTATGATCATGAGTTACAACTGAGTCAGCTCGGTCTTCTCGTGACTCAGCAACCGCCACCTCCACCATTTCAACAGCAACCGCCGTCTAA TCCTGAGCCGATTCGGCCTGTTCCGCAGTTCAGTATGCCATGGATGCCTGAGTCGTCAATTAGGTTCCCCTCTCAGACCAAACCCGCCGAGTCACCTCGT TCACAGACTCAGCAGAGAAATCCCGAGCCAACTTGGCGACAGCCTCAGCAGAAACCAATCGAACCGCCTAAGCAGCCTACCCCGCTGAAGGCCGCCACTG AGCTAAATAAGCAGCCAACTCCGTCTAAGGCTCCCAATGAGCCAACTCGGCAGCCTACCCCGCTGAAGGCCGCCACTGAGCTAAATAAGCTGTCAACCCC GTCTAAGGCTCCCAGTGAGCCTCCGCCGCTGAAGTCTTCCACTGAGCCAAATAAGCAGTCAACTCTGTCTAAGATTCCCACTGAGCCAACTCGGCCAGAG GTTGTGATTGGGTTATCTCGATCAGCGCCAAAACCGAGTGCCACTGATTCGAGGCAAGCGATGAAGCACACAACCACCTTCACCGCTGCTGCTGCAACTG GGACAAAGCATGCGAATGCGAGTGAGCCAGAGTTATCGAGTTTTTGGACTGCGTGTCCTTATTGTTATATACTTTACGAGTATCCTAAAGCTTATGAGGA GTGTATTCTAAGGTGTCAAAGTTGTAGAAGGGCATTTCATGCTGTCATGGTACCAGCACCACCGGTGACTGGTAAAGATACATACTTTTGCTGCTGGGGA TTTTTTCCGTTGGGGTTTTCAGGTAATAATGAGAAAGTAGGTAATGAGTTTGGTAGTAATTGGTCTCCGTTTTCTGCAATGTTTTCCACTCCTTTCCCAG CTGGTGGTGCTGTTGGTAGTGGTGGTCAAATGTATAATAAACTGAAGCAAAAGGTGATTTATAAAGATGATGTGTATATAGATATCTCTGACACAAGTGA AGATGAGTCTGATTCCGGTGATGAGTGGGGTGTAAAAAAGAGAAAGAAAGCAAAAAATGCAAAGGGGAAAGGAACTCCGAATAAACATGCGAAAAAATCA CAAAATGAAAGATTGAAGAAGGGGGTAGGAGCAGGGGCTGGAACAGAAAATATTCAAAATGAGGATGGTGATGGTGGGGGTAGTGTGCCAGAGGAGGTGG TGGAAAAGGGGGAAGGGAGTTGTGGCAAAAGGAAGGCAGCAAAAGATTTGGGAAAGTTGGATTTGAATGTGATGTTTAGTAATGAGGTGGATGAGGCTGC ACCTGGACCAAGTCAAAGGAATGGGCCTGGGCATGGGGAGGAGGATAATATTGAAGGGATTGGGTTTTTTGAGGGTCTTGATGAGTTTTTAAGTACCTTG CCCATACTTTCGGTTGTAGGGGATGATAAGGTGAAGGCTACTTAG
AA sequence Show only first row Show all	>Potri.017G044600.10 pacid=42814085 polypeptide=Potri.017G044600.10.p locus=Potri.017G044600 ID=Potri.017G044600.10.v4.1 annot-version=v4.1 MDGSSSGGGNGYRVEAERWLTISEKLLAARDLHGAKSFAIRARESDPRLYEFSDQIIAVADTLLAGELRVENNHHYDYYMILQLGRLTQDLELITDQYRK LALLLNPTRNRLLFADQAFKLVSEAWLVLSNPAKKAMYDHELQLSQLGLLVTQQPPPPPFQQQPPSNPEPIRPVPQFSMPWMPESSIRFPSQTKPAESPR SQTQQRNPEPTWRQPQQKPIEPPKQPTPLKAATELNKQPTPSKAPNEPTRQPTPLKAATELNKLSTPSKAPSEPPPLKSSTEPNKQSTLSKIPTEPTRPE VVIGLSRSAPKPSATDSRQAMKHTTTFTAAAATGTKHANASEPELSSFWTACPYCYILYEYPKAYEECILRCQSCRRAFHAVMVPAPPVTGKDTYFCCWG FFPLGFSGNNEKVGNEFGSNWSPFSAMFSTPFPAGGAVGSGGQMYNKLKQKVIYKDDVYIDISDTSEDESDSGDEWGVKKRKKAKNAKGKGTPNKHAKKS QNERLKKGVGAGAGTENIQNEDGDGGGSVPEEVVEKGEGSCGKRKAAKDLGKLDLNVMFSNEVDEAAPGPSQRNGPGHGEEDNIEGIGFFEGLDEFLSTL PILSVVGDDKVKAT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G64360		EIP9	EMF1-Interacting Protein 1, Ch...		Potri.017G044600 [exp]	0	1
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Potri.001G026000 [exp]	3.87	0.8568
AT3G49601			unknown protein		Potri.006G233000 [exp]	4.24	0.8574
AT3G22440			FRIGIDA-like protein (.1)		Potri.008G153000 [exp]	5.47	0.7966
AT5G09850			Transcription elongation facto...		Potri.019G003900 [exp]	6.16	0.7661
AT5G27230			Frigida-like protein (.1)		Potri.005G044000 [exp]	6.32	0.8503
AT1G31930		XLG3	extra-large GTP-binding protei...		Potri.012G042500 [exp]	8.83	0.8007
AT3G48800			Sterile alpha motif (SAM) doma...		Potri.015G104000 [exp]	9.32	0.7784
AT1G13190			RNA-binding (RRM/RBD/RNP motif...		Potri.010G051600 [exp]	9.79	0.8086
AT3G62200			Putative endonuclease or glyco...		Potri.013G003200 [exp]	11.09	0.7570
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Potri.012G106100 [exp]	12.72	0.7905	Pt-ARF2.2

Compare expression of checked genes

Potri.017G044600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.