Plant FIBer expression Database

Potri.017G044800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G114700
[exp]
40 / 4e-05 AT5G09520 / Pro-Glu-Leu|Ile|Val-Pro-Lys 2, hydroxyproline-rich glycoprotein family protein (.1)
Potri.017G044900
[exp]
39 / 8e-05 AT5G09520 / Pro-Glu-Leu|Ile|Val-Pro-Lys 2, hydroxyproline-rich glycoprotein family protein (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.017G044800.1 pacid=42812870 polypeptide=Potri.017G044800.1.p locus=Potri.017G044800 ID=Potri.017G044800.1.v4.1 annot-version=v4.1
ATGTCCACAACCATGGCCAATCATAACTTCCCATTATTTATCTTACGGTTTTTCCCACTCTTTGTGATCAGTAGTTTGTCACTGATGAACAGCCAGACAA
TTCTTGTTGAAGCCCGGCAACTCCTGGAGGTAACATTGCCTGAGCTTCCCAAGCCTGAATTGCCTAAGTTGCCACCACTGCCTGAATTCCCAAAACCTGA
ACTGCCAGAACTGCCAGAATTTGAAATACCAAAACTGCCTGAATTGCCACCTTTTCTTCATTTTCCTGAGCTGCCTAAGCCCGCATTGCCAACTATCCCC
AGGGGCATCAACCCATCTCACTCAACTACTAGTCCTTGA
AA sequence
>Potri.017G044800.1 pacid=42812870 polypeptide=Potri.017G044800.1.p locus=Potri.017G044800 ID=Potri.017G044800.1.v4.1 annot-version=v4.1
MSTTMANHNFPLFILRFFPLFVISSLSLMNSQTILVEARQLLEVTLPELPKPELPKLPPLPEFPKPELPELPEFEIPKLPELPPFLHFPELPKPALPTIP
RGINPSHSTTSP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G09520 PELPK2 Pro-Glu-Leu|Ile|Val-Pro-Lys 2,... Potri.017G044800
[exp]
0 1
Potri.001G259204
[exp]
10.44 0.7832
AT4G16380 Heavy metal transport/detoxifi... Potri.006G018901
[exp]
24.33 0.7380
AT1G08970 CCAAT NF-YC9, HAP5C "nuclear factor Y, subunit C9"... Potri.005G035800
[exp]
44.42 0.6883 HAP5.6
Potri.014G065200
[exp]
49.30 0.7087
AT3G46510 ATPUB13 ARABIDOPSIS THALIANA PLANT U-B... Potri.009G029600
[exp]
52.99 0.6265
Potri.009G100366
[exp]
54.16 0.7003
Potri.014G061600
[exp]
54.77 0.7097
AT4G23180 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-li... Potri.011G027900
[exp]
56.83 0.7002
AT5G43360 PHT1;3, ATPT4, ... PHOSPHATE TRANSPORTER 3, phosp... Potri.015G022800
[exp]
58.94 0.6927 10
AT1G15100 RHA2A RING-H2 finger A2A (.1) Potri.007G086200
[exp]
59.46 0.7069

Potri.017G044800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.