Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22500 410 / 3e-144 UCP5, ATPUMP5, DIC1 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) AT4G24570 404 / 8e-142 DIC2 dicarboxylate carrier 2 (.1) AT5G09470 332 / 4e-113 DIC3 dicarboxylate carrier 3 (.1) AT5G19760 200 / 3e-62 Mitochondrial substrate carrier family protein (.1) AT3G54110 185 / 4e-56 ATUCP1, UCP1, UCP2, UCP, ATPUMP1 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) AT5G58970 178 / 2e-53 ATUCP2 uncoupling protein 2 (.1.2) AT1G14140 161 / 5e-47 Mitochondrial substrate carrier family protein (.1) AT4G03115 149 / 3e-42 Mitochondrial substrate carrier family protein (.1) AT5G01340 76 / 1e-15 AtmSFC1 mitochondrial succinate-fumarate carrier 1, Mitochondrial substrate carrier family protein (.1) AT5G56450 73 / 2e-14 PM-ANT Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G045150 [exp] 597 / 0 AT2G22500 457 / 3e-163 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.017G045100 [exp] 593 / 0 AT2G22500 451 / 6e-161 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.007G113000 [exp] 557 / 0 AT4G24570 404 / 4e-142 dicarboxylate carrier 2 (.1) Potri.017G047800 [exp] 553 / 0 AT4G24570 435 / 2e-154 dicarboxylate carrier 2 (.1) Potri.017G045400 [exp] 476 / 2e-170 AT4G24570 355 / 4e-123 dicarboxylate carrier 2 (.1) Potri.002G104400 [exp] 441 / 2e-156 AT2G22500 427 / 1e-151 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.005G157300 [exp] 436 / 2e-154 AT2G22500 412 / 2e-145 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.017G045200 [exp] 286 / 1e-97 AT2G22500 286 / 3e-98 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.003G220400 [exp] 196 / 9e-61 AT5G19760 498 / 6e-180 Mitochondrial substrate carrier family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025725 [exp] 251 / 9e-83 AT2G22500 310 / 2e-106 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Lus10035936 [exp] 216 / 3e-69 AT4G24570 209 / 5e-67 dicarboxylate carrier 2 (.1) Lus10007883 [exp] 192 / 1e-57 AT5G19760 536 / 0.0 Mitochondrial substrate carrier family protein (.1) Lus10030361 [exp] 188 / 1e-57 AT5G19760 489 / 9e-177 Mitochondrial substrate carrier family protein (.1) Lus10027755 [exp] 188 / 2e-57 AT3G54110 515 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10035538 [exp] 186 / 1e-56 AT3G54110 512 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10021123 [exp] 183 / 2e-55 AT3G54110 521 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10017187 [exp] 175 / 2e-52 AT3G54110 501 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10040709 [exp] 175 / 3e-52 AT5G58970 512 / 0.0 uncoupling protein 2 (.1.2) Lus10009270 [exp] 162 / 1e-49 AT2G22500 204 / 8e-67 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [poplar] [flax] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Potri.017G045332.1 pacid=42814059 polypeptide=Potri.017G045332.1.p locus=Potri.017G045332 ID=Potri.017G045332.1.v4.1 annot-version=v4.1 ATGGGTTTGAAAGGTTTTGCTGAAGGTGGTGTTGCCTCCATCATTGCCGGTGCTTCCACTCATCCTTTGGATTTAATCAAGGTCCGTATGCAACTTCAAG GTGAATCCCAAATCCCAAATCTATCCTCCGTGCAATCCTATCGCCCTGCTTTTACGTTGAGCTCTACGGCCAACATCTCCTTACCAGCCACCTTAGAACT CCCTCCTCCACCCCGTGTGGGACCCCTTTCCATTGGTGTCCGTATCATCCAATCCGAGGGTGCTGCCGCCCTTTTCTCTGGTGTCTCCGCTACCATCCTC CGCCAAACCTTATACTCCACCACCCGTATGGGCCTTTATGATGTCCTCAAACATAAATGGACGGATCCAGATACTAATACCATGCCACTTGTACGTAAGA TCGTGGCTGGACTAATCTCAGGTGCTGTCGGGGCTGCTGTTGGTAACCCTGCTGATGTAGCGATGGTCCGTATGCAGGCTGATGGACGTCTCCCGATTGA TCAGCGCAGAAATTACAAGAGTGTTGTCGATGCCTTAAGTCAAATGTCAAAGCAGGAGGGTGTCGCTAGTCTGTGGCGGGGTTCGGGTCTTACTGTCAAC CGTGCGATGATTGTGACTGCATCACAGCTTGCATCATATGACCAAGCGAAGGAGATGATCTTGGAGAAGGGTTTGATGAGTGATGGGATCGGCACCCATG TCGCAGCAAGTTTTCTGGCTGGTTTTGTGGCTTCCGTTGCTTCAAACCCTATTGATGTGATCAAGACTAGAGTTATGAACATGAAGGTTGAGCCCGGGGT TGAGCCACCTTATAAGGGTGCATTAGATTGTGCACTGAAGACTGTCAAGGCAGAGGGTCCTATGGCCTTGTATAAGGGCTTTATTGTTGGAAATTTGGCA GAAATAGAGAATAGAATTGAAAAGGATTTAGGTTGCACACTCTCTAATTTGGTAGAATACAATACATATGAAAATGGTACTCTCACACTTTTTCATTATG AGATTCATACAATATATAGACATTAA
AA sequence Show only first row Show all	>Potri.017G045332.1 pacid=42814059 polypeptide=Potri.017G045332.1.p locus=Potri.017G045332 ID=Potri.017G045332.1.v4.1 annot-version=v4.1 MGLKGFAEGGVASIIAGASTHPLDLIKVRMQLQGESQIPNLSSVQSYRPAFTLSSTANISLPATLELPPPPRVGPLSIGVRIIQSEGAAALFSGVSATIL RQTLYSTTRMGLYDVLKHKWTDPDTNTMPLVRKIVAGLISGAVGAAVGNPADVAMVRMQADGRLPIDQRRNYKSVVDALSQMSKQEGVASLWRGSGLTVN RAMIVTASQLASYDQAKEMILEKGLMSDGIGTHVAASFLAGFVASVASNPIDVIKTRVMNMKVEPGVEPPYKGALDCALKTVKAEGPMALYKGFIVGNLA EIENRIEKDLGCTLSNLVEYNTYENGTLTLFHYEIHTIYRH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G22500		UCP5, ATPUMP5, ...	DICARBOXYLATE CARRIER 1, PLANT...		Potri.017G045332 [exp]	0	1
AT2G22500		UCP5, ATPUMP5, ...	DICARBOXYLATE CARRIER 1, PLANT...		Potri.017G045150 [exp]	1.41	0.9958
AT2G22500		UCP5, ATPUMP5, ...	DICARBOXYLATE CARRIER 1, PLANT...		Potri.017G045100 [exp]	1.73	0.9941
AT2G22500		UCP5, ATPUMP5, ...	DICARBOXYLATE CARRIER 1, PLANT...		Potri.017G045200 [exp]	2.82	0.9895
AT1G50600	GRAS	SCL5	scarecrow-like 5 (.1)		Potri.011G131100 [exp]	6.32	0.9435
AT4G21865			unknown protein		Potri.008G172000 [exp]	7.34	0.9511
AT2G40140	C3HZnF	ATSZF2, CZF1, Z...	\(SALT-INDUCIBLE ZINC FINGER 2...		Potri.010G187900 [exp]	10.39	0.9197
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Potri.003G182200 [exp]	10.95	0.9542	WRKY40.2
AT4G39830			Cupredoxin superfamily protein...		Potri.007G088358 [exp]	12.12	0.9450
AT5G67080		MAPKKK19	mitogen-activated protein kina...		Potri.007G044800 [exp]	12.24	0.9372
AT3G18360			VQ motif-containing protein (....		Potri.015G046600 [exp]	13.78	0.9431

Compare expression of checked genes

Potri.017G045332 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.