Plant FIBer expression Database

Potri.017G045501 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.017G045501.1 pacid=42814281 polypeptide=Potri.017G045501.1.p locus=Potri.017G045501 ID=Potri.017G045501.1.v4.1 annot-version=v4.1
ATGGAATCTTCCATTCGCTGCATGCCATCTTGGACTCCACCAAGTCCTGCCTCCAAAAGCTCGATTCATTCTTTGTTTGTTGTCATTGCGCCAGCTTTGA
TACCAATTGATATACAGCTCACCAAGCTGCGTATCACTCTATCATTCTCGGATGGCGAAGCAGCTCGTCATCTCCTGCAGTTGCCCAATTTGCCTTCTCT
ACCGAATTTGCCTAAACCAACACTGCCGCCATTTCCTTCTATACCAACACTGCCGCAGCCCACATTGCCAACCTTGCCAGCCACTCAACCATCACTGCCT
AAGCCTCCACTGCCTCCACTTCCCAGCCTGCCAACAATGCCTGCTATCCCCAAGGTCACCTTGCCTCCACTTCCAAGCATGCCTTCAATCCCCACCATCC
CAACAACAATTCCCTCCATCCCCTTCCTCTCCCCACCTCCCGGAAATTAG
AA sequence
>Potri.017G045501.1 pacid=42814281 polypeptide=Potri.017G045501.1.p locus=Potri.017G045501 ID=Potri.017G045501.1.v4.1 annot-version=v4.1
MESSIRCMPSWTPPSPASKSSIHSLFVVIAPALIPIDIQLTKLRITLSFSDGEAARHLLQLPNLPSLPNLPKPTLPPFPSIPTLPQPTLPTLPATQPSLP
KPPLPPLPSLPTMPAIPKVTLPPLPSMPSIPTIPTTIPSIPFLSPPPGN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.017G045501
[exp]
0 1
Potri.007G086400
[exp]
1.41 0.9689
AT5G06720 ATPA2 peroxidase 2 (.1) Potri.004G144500
[exp]
2.82 0.9360
AT3G02850 SKOR STELAR K+ outward rectifier, S... Potri.017G135400
[exp]
11.83 0.9253 Pt-SKOR.4
AT5G17540 HXXXD-type acyl-transferase fa... Potri.001G127400
[exp]
15.23 0.9054
AT5G15180 Peroxidase superfamily protein... Potri.007G122451
[exp]
15.49 0.9304
AT4G00910 Aluminium activated malate tra... Potri.003G145000
[exp]
20.00 0.9114
AT3G10985 WI12, ATWI-12, ... ARABIDOPSIS THALIANA WOUND-IND... Potri.019G125900
[exp]
28.80 0.8992
AT2G38940 PHT1;4, ATPT2 ARABIDOPSIS THALIANA PHOSPHATE... Potri.010G072000
[exp]
31.19 0.9085 Pt-PT2.8,PtrPHT1-1
AT5G19970 unknown protein Potri.018G071900
[exp]
42.49 0.8559
AT2G17080 Arabidopsis protein of unknown... Potri.009G142600
[exp]
46.20 0.8391

Potri.017G045501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.