Plant FIBer expression Database

Potri.017G046750 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs

No hit found
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.017G046750.1 pacid=42812981 polypeptide=Potri.017G046750.1.p locus=Potri.017G046750 ID=Potri.017G046750.1.v4.1 annot-version=v4.1
ATGGCAGCTTTCAAGTGTCTTATCTTGTCTCTCTTCATTGCTTTGTCGTTTTTGGGAGGGGAAGCAGCTCGTAATCTTCTGCAATTGCCAAATCTGCCTA
AACCAGCATTGCCACCATTGCCTTCTATACCATCTCTGCCACAGCCCACCTTGCCAGCCTTGCCAACCACTCAACCTTCACTGCCTAACCCCAATTTGCC
TCCACTTCCTAGCCTCCCTACGATGCCAACAATGCCTGCAGTTCCGAAGGTCAGCTTGCCTCCACTTCCAAGCATGCCAACACTGCCTACTGTCGTCCCC
AAGGCCAGCTTGCCTCCACTTCCAAGCATGCCTTCAATTCCCAATATCCCTCTCCCAACTACAATTCCCTCTATTCCATTCCTCTCCCCGCCACCAGCTG
GAAATTAG
AA sequence
>Potri.017G046750.1 pacid=42812981 polypeptide=Potri.017G046750.1.p locus=Potri.017G046750 ID=Potri.017G046750.1.v4.1 annot-version=v4.1
MAAFKCLILSLFIALSFLGGEAARNLLQLPNLPKPALPPLPSIPSLPQPTLPALPTTQPSLPNPNLPPLPSLPTMPTMPAVPKVSLPPLPSMPTLPTVVP
KASLPPLPSMPSIPNIPLPTTIPSIPFLSPPPAGN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.017G046750
[exp]
0 1
AT1G29000 Heavy metal transport/detoxifi... Potri.014G178800
[exp]
3.60 0.9599
AT2G46130 WRKY ATWRKY43, WRKY4... WRKY DNA-binding protein 43 (.... Potri.014G090700
[exp]
4.24 0.9582
AT5G52450 MATE efflux family protein (.1... Potri.010G116700
[exp]
6.24 0.9234
AT1G68850 Peroxidase superfamily protein... Potri.010G134500
[exp]
6.70 0.9517
AT1G53270 ABCG10 ATP-binding cassette G10, ABC-... Potri.011G112100
[exp]
8.66 0.9040 2
AT5G41040 HXXXD-type acyl-transferase fa... Potri.001G326300
[exp]
9.59 0.9427
AT5G58860 CYP86A1 "cytochrome P450, family 86, s... Potri.009G043700
[exp]
11.18 0.9393 CYP86A19,Pt-CYP86.4
AT5G16770 MYB ATMYB9 myb domain protein 9 (.1.2) Potri.019G050900
[exp]
11.66 0.9331 MYB101.1
AT3G50440 ATMES10 ARABIDOPSIS THALIANA METHYL ES... Potri.009G107200
[exp]
16.49 0.8646
AT1G70140 ATFH8 formin 8 (.1) Potri.010G037900
[exp]
16.70 0.8927

Potri.017G046750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.