Plant FIBer expression Database

Potri.017G047100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs

No hit found
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.017G047100.1 pacid=42813324 polypeptide=Potri.017G047100.1.p locus=Potri.017G047100 ID=Potri.017G047100.1.v4.1 annot-version=v4.1
ATGGCAGCTTTCAAGTGTCTTATCTTGTCTCTCTTCATTGCTTTGTCGTTTTTGGGAGGGGAAGCAGCTCGTAATCTTCTGCAATTGCCAAATCTGCCTA
AACCAGCATTGCCACCATTGCCTTCTATACCATCTCTGCCACAGCCCACATTGCCAACTTTGCCCACCACCCAACAACCTTCACTGCCTAAACCCTCTCT
GCCTCCACTTCCAAGCATGCCAACACTGCCTACTGTCGTCCCCAAGGCCACCTTGCCTCCACTTCCAAGCATGCCAACACTGCCTACTGTCGTCCCCAAG
CTCAGCTTGCCTCCACTTCCAAGCATGCCTTCAATTCCCAATATCCCTCTCCCAACAACAATTCCCTCTATTCCATTCCTCTCCCCGCCACCAGCTGGAA
ATTAG
AA sequence
>Potri.017G047100.1 pacid=42813324 polypeptide=Potri.017G047100.1.p locus=Potri.017G047100 ID=Potri.017G047100.1.v4.1 annot-version=v4.1
MAAFKCLILSLFIALSFLGGEAARNLLQLPNLPKPALPPLPSIPSLPQPTLPTLPTTQQPSLPKPSLPPLPSMPTLPTVVPKATLPPLPSMPTLPTVVPK
LSLPPLPSMPSIPNIPLPTTIPSIPFLSPPPAGN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.017G047100
[exp]
0 1
AT3G11430 ATGPAT5, GPAT5 glycerol-3-phosphate acyltrans... Potri.010G201200
[exp]
1.00 0.9895
AT5G07475 Cupredoxin superfamily protein... Potri.003G150300
[exp]
1.41 0.9883
Potri.017G047200
[exp]
1.73 0.9850
AT4G22810 AT-hook Predicted AT-hook DNA-binding ... Potri.003G116900
[exp]
2.82 0.9844
AT5G20230 SAG14, ATBCB SENESCENCE ASSOCIATED GENE 14,... Potri.018G129400
[exp]
2.82 0.9746
AT4G35160 O-methyltransferase family pro... Potri.011G059500
[exp]
3.16 0.9833 Pt-OOMT2.14,FOMT7
AT2G15490 UGT73B4 UDP-glycosyltransferase 73B4 (... Potri.001G302400
[exp]
5.83 0.9677
Potri.019G082733
[exp]
6.48 0.9801
AT1G54540 Late embryogenesis abundant (L... Potri.017G154000
[exp]
6.92 0.9690
AT2G26560 PLP2, PLAIIA, P... PATATIN-LIKE PROTEIN 2, phosph... Potri.017G134151
[exp]
7.07 0.9569

Potri.017G047100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.