Plant FIBer expression Database

Potri.017G047700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G58120 254 / 7e-81 unknown protein
AT5G01710 77 / 6e-15 methyltransferases (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G113200
[exp]
645 / 0 AT1G58120 252 / 6e-80 unknown protein
Potri.002G104500
[exp]
285 / 7e-93 AT1G58120 283 / 1e-91 unknown protein
Potri.016G128100
[exp]
60 / 1e-09 AT5G01710 740 / 0.0 methyltransferases (.1)
Potri.006G105100
[exp]
58 / 7e-09 AT5G01710 720 / 0.0 methyltransferases (.1)
Potri.013G153300
[exp]
54 / 1e-07 AT5G01710 498 / 1e-173 methyltransferases (.1)
Potri.006G128800
[exp]
45 / 5e-05 AT3G53400 418 / 3e-143 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014232
[exp]
79 / 9e-16 AT5G01710 697 / 0.0 methyltransferases (.1)
Lus10012217
[exp]
77 / 8e-15 AT5G01710 733 / 0.0 methyltransferases (.1)
Lus10001267
[exp]
75 / 2e-14 AT5G01710 737 / 0.0 methyltransferases (.1)
Lus10022682
[exp]
64 / 6e-11 AT5G01710 698 / 0.0 methyltransferases (.1)
Lus10019932
[exp]
43 / 0.0004 AT3G53400 385 / 1e-130 unknown protein
Lus10026502
[exp]
42 / 0.0007 AT3G53400 392 / 1e-133 unknown protein
PFAM info
Representative CDS sequence
>Potri.017G047700.1 pacid=42813856 polypeptide=Potri.017G047700.1.p locus=Potri.017G047700 ID=Potri.017G047700.1.v4.1 annot-version=v4.1
ATGGAATCAGCCAGTGGGTTTTCTACCAAGGATCTAAATGAGATCAAGCATTTGCACAATGGAGGGATTGGCTTAAATTCAGATATCATTTTGGTGCTTA
AGCTTCCTGATTCCCGAGTAATGCGTGTTGTGTCTCGCTCGTTGTTTTTCGTTATGATTATTCTTGCATTGCCATTTATGGGGTCCATTTTAAGGGAACT
GAAATCAAGTTATTATCTTGACGTCTCTGGCTCTGCTTCAATTGATCTTGAATTCTTCGATTTGTTGTTGCAAAATTTGGCCAAGGAGGGCCTTATCAAG
AAGGGCGATAAAGCTCTCATTGTTTTCTCCGGCGTCGGGGCTGTAGTTGATAGTTCAAGACTCTTGAATGTCAATGATATTGATTTCGTATCAGAATCTG
ATTTGGAGGAAGAAAGCTTGTTCCCGAATGCAACATTTGATTTTGCGTTGACATTGCACATTAAAGATGCAAAATTTTTAGATCGCATTGTGAAAGTTGG
AGGCATTCTGGTTGCTCAATTGAGCAATGACCCCTCAAATGCTTTCCAGAAGATGTCAAATTATAGAGTTGTGTATCTTCGGCGATATGACTCAACCATC
GTGGCAATGAGGAAAACGAGTTTGGTGAATCAGATAGTGAGTTCTGTGGCAAAGAGGCGGCCTTTGCAGCTAGCATTAGATGCTAAGAAAGAGGCATTGC
AAGGCTTGGAAGATATTCTGCTTGAGCCACCACGAAAGACTCCGGAAAAATCTAGAATGTACTTGAAGGGATTCAAATATCTTCCTGACTTGTTGGGAGA
TTCTTTAGAAGGTTTCTCGCGTCGATTTTTCATTGATGCGGGCTCACAGGAGGAGGAGAATGGTGCAATGCTATGGTTTAATGAAAACTATCCAACTAGA
AATCAAGACTTCGAGTTTCACAGCATAAACATGTTGTCTGAGGGAGTGCCTGGGAGGGTGGCATCACCTGCTGATGTTTCAAATTGGTTGATGAAGAACG
TGAGGGAAGATGAGTTCGTTGTGATGAAAGCAGAAGCAGAAGTAGCAGAGGAGATGATGAAGAGGAAGACAATTGGTTTGGTGGATGAATTGTTTCTAGA
GTGCAACAACCAATGGCAGAAAGGGCAAAGGAAGAAGAGCAGGAGGGCTTATTGGGAATGTGTAGCACTGTATGGAAGACTGAGAGACGAGGGAGTTGCT
GTGCATCAATGGTGGGATTGA
AA sequence
>Potri.017G047700.1 pacid=42813856 polypeptide=Potri.017G047700.1.p locus=Potri.017G047700 ID=Potri.017G047700.1.v4.1 annot-version=v4.1
MESASGFSTKDLNEIKHLHNGGIGLNSDIILVLKLPDSRVMRVVSRSLFFVMIILALPFMGSILRELKSSYYLDVSGSASIDLEFFDLLLQNLAKEGLIK
KGDKALIVFSGVGAVVDSSRLLNVNDIDFVSESDLEEESLFPNATFDFALTLHIKDAKFLDRIVKVGGILVAQLSNDPSNAFQKMSNYRVVYLRRYDSTI
VAMRKTSLVNQIVSSVAKRRPLQLALDAKKEALQGLEDILLEPPRKTPEKSRMYLKGFKYLPDLLGDSLEGFSRRFFIDAGSQEEENGAMLWFNENYPTR
NQDFEFHSINMLSEGVPGRVASPADVSNWLMKNVREDEFVVMKAEAEVAEEMMKRKTIGLVDELFLECNNQWQKGQRKKSRRAYWECVALYGRLRDEGVA
VHQWWD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G58120 unknown protein Potri.017G047700
[exp]
0 1
AT1G66150 TMK1 transmembrane kinase 1 (.1) Potri.004G084000
[exp]
9.59 0.7297
AT1G63850 BTB/POZ domain-containing prot... Potri.001G100900
[exp]
17.08 0.7244
AT3G23750 Leucine-rich repeat protein ki... Potri.006G073900
[exp]
22.09 0.6699 RHG4.2
AT1G30570 HERK2 hercules receptor kinase 2 (.1... Potri.011G164700
[exp]
28.93 0.6679
AT1G79720 Eukaryotic aspartyl protease f... Potri.003G185175
[exp]
29.39 0.6266
AT4G32410 AtCESA1, RSW1, ... RADIALLY SWOLLEN 1, cellulose ... Potri.018G029400
[exp]
41.42 0.6268 Pt-CESA1.2
AT5G18310 unknown protein Potri.019G029600
[exp]
43.41 0.5962
AT1G55210 Disease resistance-responsive ... Potri.003G216300
[exp]
47.98 0.6109
AT1G76240 Arabidopsis protein of unknown... Potri.002G011600
[exp]
48.19 0.5743
AT3G18800 unknown protein Potri.001G309000
[exp]
49.85 0.6591

Potri.017G047700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.