Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09460 105 / 9e-26 bHLH bHLH143 sequence-specific DNA binding transcription factors;transcription regulators (.1) AT5G64340 99 / 3e-23 bHLH bHLH142, SAC51 SUPPRESSOR OF ACAULIS 51, sequence-specific DNA binding transcription factors;transcription regulators (.1) AT5G50010 57 / 8e-09 bHLH sequence-specific DNA binding transcription factors;transcription regulators (.1) AT1G59640 47 / 1e-05 bHLH ZCW32, bHLH031, BPE, BPEUB, BPEP BIG PETAL UB, BIG PETAL P (.1.2) AT1G29950 45 / 2e-05 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT5G67110 45 / 3e-05 bHLH ALC, bHLH073 ALCATRAZ, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT1G09530 44 / 0.0002 bHLH PIF3, POC1, PAP3 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) AT2G24260 43 / 0.0002 bHLH LRL1, bHLH066 LJRHL1-like 1 (.1) AT2G20180 43 / 0.0003 bHLH PIF1, PIL5, bHLH015 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) AT4G30980 43 / 0.0003 bHLH LRL2, bHLH069 LJRHL1-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G112800 [exp] 508 / 0 AT5G09460 114 / 1e-28 sequence-specific DNA binding transcription factors;transcription regulators (.1) Potri.005G158100 [exp] 142 / 4e-39 AT5G50010 130 / 4e-35 sequence-specific DNA binding transcription factors;transcription regulators (.1) Potri.002G103300 [exp] 131 / 1e-34 AT5G50010 98 / 4e-23 sequence-specific DNA binding transcription factors;transcription regulators (.1) Potri.005G207200 [exp] 50 / 2e-06 AT2G43010 171 / 1e-47 phytochrome interacting factor 4 (.1.2) Potri.011G080000 [exp] 47 / 6e-06 AT1G29950 140 / 8e-41 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.002G252800 [exp] 47 / 2e-05 AT2G20180 222 / 7e-66 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) Potri.006G186600 [exp] 45 / 4e-05 AT2G24260 198 / 2e-59 LJRHL1-like 1 (.1) Potri.018G109500 [exp] 45 / 5e-05 AT2G24260 194 / 5e-58 LJRHL1-like 1 (.1) Potri.002G055400 [exp] 44 / 0.0002 AT2G43010 177 / 6e-50 phytochrome interacting factor 4 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004927 [exp] 50 / 2e-06 AT1G29950 126 / 6e-34 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10004926 [exp] 48 / 4e-06 AT1G29950 130 / 4e-37 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10029805 [exp] 48 / 8e-06 AT3G59060 163 / 7e-45 PHYTOCHROME-INTERACTING FACTOR 5, phytochrome interacting factor 3-like 6 (.1.2.3.4) Lus10020727 [exp] 48 / 1e-05 AT2G30800 1223 / 0.0 helicase in vascular tissue and tapetum (.1) Lus10038020 [exp] 47 / 1e-05 AT4G36930 105 / 1e-24 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10040879 [exp] 47 / 1e-05 AT1G29950 130 / 2e-36 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10022833 [exp] 46 / 4e-05 AT2G20180 310 / 5e-99 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) Lus10009261 [exp] 46 / 4e-05 AT4G36930 102 / 7e-24 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10036286 [exp] 45 / 6e-05 AT2G24260 214 / 2e-67 LJRHL1-like 1 (.1) Lus10011899 [exp] 45 / 0.0001 AT2G20180 290 / 6e-92 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.017G048000.1 pacid=42812896 polypeptide=Potri.017G048000.1.p locus=Potri.017G048000 ID=Potri.017G048000.1.v4.1 annot-version=v4.1 ATGGTTAAGGCTGAAGGTTCTTGGCTTTCTCCACCACATTCTACTCGGAAATTGCCAAATTTCCATTGCATGACCACATCATTGGATCCTGCGCAACTAC AATGTTTGCCAGAATGTATGAACCCTGGCACGCGCATGACTTCTGCAAATATGGCAATGCCAGGGCTGGCAGTTTCAAGCATTCCAAATTTCAAGACACA AGGCAATGAAGCCTACGGGTTGCCTCAGTGTTTACCCTCTAACTTTCAGAATTTTCTTCACGCTACAAATCCATATGTCAGAGAAAATTTGTCTGTGTTT TCTTATGGGTTTGGTAGGGAGGGTGTGCGAAATCCAATCCCTGGATGCCAGAGAAGGTTCCTTGTTTTCGATCAGTCTGGTAATGAACAAAGGTTGATCT ATAGTTCCTTTGGCCCTCCTGTCCCAAAACCAACTGCAGCTGATGCAAAGCCAATTCCGGGTTATTTTGACCACAACGAATATGCTGCAAAAATGGACCA GACAAAGCTGATGAAGTTGCCTGAAGTATCAGACGAGAATCACTTTACTAGTGAAGAAAGTGAGATGCATGAGGACACTGAAGAAATTAATGCCCTGCTA TACTCAGATGATGACTATTATGATGAAAATGGTGGTGGCAGTGATGATGATGGTGATGATAGTGACGACGATGAGGTAAGGAGTACTGGTCACTCTCCCA TTCTGATTAAAAGTCACGGGACACAAGAACAGGCAGAGAAAATAATAGAGGAGGAAGGTACTAGTTCTGATGGCCCAAACAAACGGCAGAAATTGATCGA TGGCGGGTACAAAAAATCATCACTAGTAGACACTGCTAGTTCAGTAAAAGTGGAAACATTTCATGGATACGACGATGATATGGAATCGAACTATGCTAAA CGGCAAAGCCAAGATGGGGAAATGATTTCCATTTTGAGCAGCAAGCAATTTAGAAAGGACAAGATTCGTGCAACGTTGAAAATTCTGGAGAGCATAATCC CTGGTGCAAAGGATAAAGAACCATTGTTGGTCCTTGATGAAGCTATAGATTACTTGAAGTCTTTGAAGCTCAAGGCCAAAACTCTAGGAGTGAGCTACCT TTAA
AA sequence Show only first row Show all	>Potri.017G048000.1 pacid=42812896 polypeptide=Potri.017G048000.1.p locus=Potri.017G048000 ID=Potri.017G048000.1.v4.1 annot-version=v4.1 MVKAEGSWLSPPHSTRKLPNFHCMTTSLDPAQLQCLPECMNPGTRMTSANMAMPGLAVSSIPNFKTQGNEAYGLPQCLPSNFQNFLHATNPYVRENLSVF SYGFGREGVRNPIPGCQRRFLVFDQSGNEQRLIYSSFGPPVPKPTAADAKPIPGYFDHNEYAAKMDQTKLMKLPEVSDENHFTSEESEMHEDTEEINALL YSDDDYYDENGGGSDDDGDDSDDDEVRSTGHSPILIKSHGTQEQAEKIIEEEGTSSDGPNKRQKLIDGGYKKSSLVDTASSVKVETFHGYDDDMESNYAK RQSQDGEMISILSSKQFRKDKIRATLKILESIIPGAKDKEPLLVLDEAIDYLKSLKLKAKTLGVSYL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G09460	bHLH	bHLH143	sequence-specific DNA binding ...		Potri.017G048000 [exp]	0	1
AT1G48410		AGO1	ARGONAUTE 1, Stabilizer of iro...		Potri.012G037100 [exp]	2.00	0.7631
AT5G60580			RING/U-box superfamily protein...		Potri.009G013300 [exp]	4.24	0.7732
AT3G48670		RDM12, IDN2	RNA-DIRECTED DNA METHYLATION 1...		Potri.010G202700 [exp]	6.00	0.7264
AT4G11670			Protein of unknown function (D...		Potri.001G108400 [exp]	8.00	0.7511
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Potri.006G077800 [exp]	9.48	0.7516
AT4G29100	bHLH	bHLH068	basic helix-loop-helix (bHLH) ...		Potri.003G051600 [exp]	10.24	0.7001
AT2G22840	GRF	ATGRF1	growth-regulating factor 1 (.1...		Potri.007G007100 [exp]	12.96	0.7114
AT1G21690		RFC4, EMB1968	replication factor C 4, embryo...		Potri.002G080100 [exp]	13.41	0.6513
AT2G31280	bHLH	bHLH155 ,CPuORF...	conserved peptide upstream ope...		Potri.005G222500 [exp]	14.49	0.7250
AT5G09460	bHLH	bHLH143	sequence-specific DNA binding ...		Potri.007G112800 [exp]	15.29	0.7041

Compare expression of checked genes

Potri.017G048000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.