Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64330 993 / 0 JK218, RPT3, NPH3 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) AT5G10250 443 / 5e-148 DOT3 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) AT1G30440 445 / 6e-148 Phototropic-responsive NPH3 family protein (.1) AT5G03250 413 / 2e-136 Phototropic-responsive NPH3 family protein (.1) AT5G13600 386 / 3e-126 Phototropic-responsive NPH3 family protein (.1) AT5G67440 384 / 1e-125 MEL2, NPY3 NAKED PINS IN YUC MUTANTS 3, MAB4/ENP/NPY1-LIKE 2, Phototropic-responsive NPH3 family protein (.1.2) AT3G44820 381 / 2e-123 Phototropic-responsive NPH3 family protein (.1) AT1G67900 377 / 3e-122 Phototropic-responsive NPH3 family protein (.1.2.3) AT2G14820 373 / 2e-120 MEL3, NPY2 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) AT5G48800 366 / 3e-118 Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G112600 [exp] 1241 / 0 AT5G64330 989 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Potri.005G075400 [exp] 545 / 0 AT5G10250 695 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Potri.007G093000 [exp] 509 / 3e-173 AT5G10250 706 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Potri.001G357100 [exp] 480 / 5e-162 AT1G30440 971 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.011G091100 [exp] 456 / 9e-153 AT1G30440 924 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.016G090400 [exp] 427 / 1e-141 AT5G03250 768 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.005G146400 [exp] 417 / 7e-138 AT2G14820 671 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Potri.013G024400 [exp] 414 / 4e-137 AT5G10250 331 / 5e-106 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Potri.008G038600 [exp] 415 / 8e-137 AT5G03250 723 / 0.0 Phototropic-responsive NPH3 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014337 [exp] 498 / 1e-168 AT5G10250 620 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Lus10026046 [exp] 496 / 1e-167 AT5G10250 639 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Lus10040484 [exp] 474 / 1e-161 AT5G64330 440 / 5e-150 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Lus10011290 [exp] 451 / 2e-152 AT5G64330 438 / 3e-149 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Lus10023274 [exp] 444 / 1e-147 AT1G30440 910 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10038531 [exp] 436 / 1e-144 AT1G30440 915 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10025928 [exp] 407 / 4e-134 AT5G48800 925 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10019522 [exp] 405 / 5e-133 AT3G44820 781 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10040409 [exp] 400 / 6e-131 AT5G03250 667 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10013799 [exp] 400 / 7e-131 AT5G03250 672 / 0.0 Phototropic-responsive NPH3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03000 [poplar] [flax] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Potri.017G048200.1 pacid=42814384 polypeptide=Potri.017G048200.1.p locus=Potri.017G048200 ID=Potri.017G048200.1.v4.1 annot-version=v4.1 ATGTGGGACTCTGAGAGTGAATCTGTCACTGGTAGAGATTATGAAAATGGAATCCTTTCCTCAAGCAAGCATGGTGTCAAGAATGATGGATTTGAGCTAA GAGATCACTCGTGGTATGTTGCGACTAATATTCCAAGTGATTTTCTAGTTCAGGTTGGAGATGTAAATTTCCACTTGCATAAGTATCCATTGCTTTCAAG AAGTGGAAAGATGAATAGACTAATATATGAATCGCGTGACCTGGGCCTCAACAAGGTGGCATTGGATGATCTTCCGGGTGGACCAGAGGCCTTTGAGCTT GCAGCAAAATTCTGCTATGGCATAGCCGTTGATCTAACAGCTGCCAATATCTCTGGCCTAAGATGTGCTGCAGAGTACCTTGAAATGACAGAGGACTTGG AAGAAGGCAATCTTACTTTCAAGACCGAAGCATTTCTCAGTTATGTGGTGCTATCCTCGTGGAGAGATTCTATAGTGGTATTGAAAAGCTGTGAGAAGCT CTCGCCATGGGCAGAGAATCTTCAGATTGTTCGAAGATGTAGTGAGTCCATCGCTTGGAAGGCTTGCGCAAATCCTAAAGGAATAAGGTGGGCATACACT GGAAAACCCCCTAAAGTTTCTAGTCCAAAATGGAATGAGATGAAGGATTCAAGTCCTAGTAGAAACTCGCAAGTTCCGCCTGATTGGTGGTTTGAAGATG TTTCAATCCTTAGGATTGATCACTTTGTTAGAGTCATTACTGCAATCAAGGTAAAGGGGATGAGGTTTGAATTGATTGGAGCTGCTATAATGCATTATGC AGGAAAGTGGCTTCCAGGTTTGATTAAAGATGGGGGAGGTTCTATAGATGAAGCAAGCAATAGCAGCAATAGTAGTGGTGGCAGTAGTTGGAAAGGTGGA CTCCATATGATTGTGGCAGTTTCTAAAGATGACACCCCAACAGCTGAAACCAAAGATCAACGGATGATCGTCGAGAGCCTGATCAGCATAATTCCACCAC AGAAGGATAGTGTCTCTTGCAGCTTCCTTCTTCGCCTGCTGAGAATGGCAAACATGTTGAAAGTGGCACCTGCTCTGGTAACTGAATTGGAGAAGCGCGT AGGAATGCAGTTCGAACAGGCTACATTGGCAGATCTTCTAATTCCCTCTTACAATAAAAATGAAACTTCGTATGATGTGGATCTGGTTCAGAGACTTCTC GAGCATTTTCTGGTTCAAGAGCAGATAGAAAGTTCAAGTCCTACCACGCAATCATTTTCTGACAAACATATGTACGACGGAGCTCAAAGGGGTGCCAATC CAAGTGCCAAGATCAGAGTAGCAAGGCTTGTTGACAGTTATCTTACAGAGGTGTCCAGAGATAGAAACCTTTCGCTAACAAAATTCCAGGTGCTGGCAGA AGCTTTGCCTGATTCTGCAAGGACCTGCGACGATGGACTATATAGAGCAGTTGATTCCTATCTTAAGGCTCATCCAACACTGTCTGAGCATGAAAGGAAG CGCCTCTGTCGTGTGATGGACTGTCAAAAACTCTCAATTGATGCCTGTATGCATGCTGCTCAAAATGAAAGACTACCACTTAGAGTTGTAGTCCAAGTAC TCTTTTCTGAACAGGTAAAAATAAGCAATGCATTAGCAAACAATTCCCTGAAAGAAACTGGTGAAACTCAGTACCAACCTATGATATCAAACCGAAAATC TCTACTTGAAGGGACGCCACAATCATTCCAGGAAGGATGGGCAGCAGCCAAGAAGGACATTAACTCACTCAAGTTTGAACTCGAAACCGTCAAGGCTAAA TATCATGAGCTCCAAAATGACATGGACATTTTGCAGAGACAGTTTGATAAATTGACAAATAAGAAACAGGCGTCAGCATGGACCACAGGGTGGAAGAAAC TAAGCAAATTCACCAAGATGACAACTTTGGAAAACCATGATATCGATCCTCAGGTTGCTACAGCTCCTGGAGAACATACTAGTAAGACAACTAGAAGGTG GAGAAATTCTATTTCCTGA
AA sequence Show only first row Show all	>Potri.017G048200.1 pacid=42814384 polypeptide=Potri.017G048200.1.p locus=Potri.017G048200 ID=Potri.017G048200.1.v4.1 annot-version=v4.1 MWDSESESVTGRDYENGILSSSKHGVKNDGFELRDHSWYVATNIPSDFLVQVGDVNFHLHKYPLLSRSGKMNRLIYESRDLGLNKVALDDLPGGPEAFEL AAKFCYGIAVDLTAANISGLRCAAEYLEMTEDLEEGNLTFKTEAFLSYVVLSSWRDSIVVLKSCEKLSPWAENLQIVRRCSESIAWKACANPKGIRWAYT GKPPKVSSPKWNEMKDSSPSRNSQVPPDWWFEDVSILRIDHFVRVITAIKVKGMRFELIGAAIMHYAGKWLPGLIKDGGGSIDEASNSSNSSGGSSWKGG LHMIVAVSKDDTPTAETKDQRMIVESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLIPSYNKNETSYDVDLVQRLL EHFLVQEQIESSSPTTQSFSDKHMYDGAQRGANPSAKIRVARLVDSYLTEVSRDRNLSLTKFQVLAEALPDSARTCDDGLYRAVDSYLKAHPTLSEHERK RLCRVMDCQKLSIDACMHAAQNERLPLRVVVQVLFSEQVKISNALANNSLKETGETQYQPMISNRKSLLEGTPQSFQEGWAAAKKDINSLKFELETVKAK YHELQNDMDILQRQFDKLTNKKQASAWTTGWKKLSKFTKMTTLENHDIDPQVATAPGEHTSKTTRRWRNSIS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Potri.017G048200 [exp]	0	1
AT3G57800	bHLH	bHLH060	basic helix-loop-helix (bHLH) ...		Potri.006G057200 [exp]	4.58	0.8916
AT5G47740			Adenine nucleotide alpha hydro...		Potri.012G084700 [exp]	4.89	0.8824
AT1G67480			Galactose oxidase/kelch repeat...		Potri.008G176000 [exp]	5.47	0.8843
AT5G03150	C2H2ZnF	JKD	JACKDAW, C2H2-like zinc finger...		Potri.006G129300 [exp]	5.74	0.8764
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Potri.013G022000 [exp]	6.16	0.8636	Pt-LOX1.6
AT5G43630		TZP	zinc knuckle (CCHC-type) famil...		Potri.008G162150 [exp]	6.32	0.8905
AT5G15140			Galactose mutarotase-like supe...		Potri.017G080000 [exp]	6.63	0.8986
AT1G67900			Phototropic-responsive NPH3 fa...		Potri.010G046800 [exp]	7.74	0.8218
AT1G67050			unknown protein		Potri.017G115700 [exp]	8.36	0.8730
AT3G45780		RPT1, NPH1, JK2...	ROOT PHOTOTROPISM 1, NONPHOTOT...		Potri.001G342000 [exp]	10.19	0.8731	Pt-PHOT1.1

Compare expression of checked genes

Potri.017G048200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.