Plant FIBer expression Database

Potri.017G048300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G33600 573 / 0 unknown protein
AT4G33590 571 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G112500
[exp]
866 / 0 AT4G33590 564 / 0.0 unknown protein
Potri.002G102300
[exp]
502 / 9e-176 AT4G33600 464 / 3e-161 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001351
[exp]
580 / 0 AT4G33590 519 / 0.0 unknown protein
Lus10041131
[exp]
437 / 2e-150 AT4G33590 443 / 3e-153 unknown protein
Lus10036462
[exp]
228 / 5e-72 AT4G33590 218 / 5e-69 unknown protein
Lus10036463
[exp]
164 / 4e-48 AT4G33590 162 / 3e-48 unknown protein
Lus10035441
[exp]
43 / 0.0007 AT2G41640 560 / 0.0 Glycosyltransferase family 61 protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04577 DUF563 Protein of unknown function (DUF563)
Representative CDS sequence
>Potri.017G048300.1 pacid=42814484 polypeptide=Potri.017G048300.1.p locus=Potri.017G048300 ID=Potri.017G048300.1.v4.1 annot-version=v4.1
ATGGCTAAATCAACTGTAGAACTAAGCAGACCCGCAAATCCCACTCTCAAAAAACCTTCATTTCCTAAAAAACGCACGACCATGTCAGTCTTTTGTTTAT
ACTCCCCTAAGCTCTCTATCTTCCTTCTAGCCCTTTGTGTTTCTCTCTTCACTCTCTACCACATCCAGTCCCTCCATGCCCGGACGACATCTTCACCTCC
ATGGTCTTTCGTGCACCAATGGGAAAGATTCACCAATTGCACTCAAGAACATGGATCCATGGCTGAAAAACTCCGGCAGTCGGTTACATTTCTCCCACTT
AAGGACTTACGTTATGCGGATAAAGCTCGTCAAGGTCACACGTGGTTCATGAGCTCCACGTATGATACTCGTGAAGAGGGTGGGGTGCAATATCAGCAGT
TTCCTTCAGAATCATCAAAACGTAGGCTACTTTGCTTGAAAGGAAAGGAGACACATGATGGTTCCTGGAATTCCTATGCACTTGCATGGCCAGAAGCCTT
GCCTTTCAATGCCACGCTTCTGAAAGGCCTAACTTTTGTATCGTATAACCATTATGACTACGACAACATTTGGCATGGTTTATCAGCTATGGTACCATTT
GTTGCTTGGCATATAAGAAATGGGTGTGAATCGCCTAGTAGATGGATTTTGTACCACTGGGGTGAGCTAAGGTTCGAAATGGGTCCATGGCTGAGGACCC
TAACAGGGGCCACATTCGGTGGAGCCCCATACACTGAAAGCTTTGAAGGGGTTAACGATGGCCAACCACTTTGCTTTGAAAAAGCTGTGGTTATGAGGCA
CAATGAAGGAGGCATGTCAAGGGACAGGAGGACTGAGACTTACGATTTGATGAGATGCAAAGCTAGGATGTATTGTAATGTAAGCTTAGAGGGCCGTATT
CCTGAAGTAAATAAGCAAGGTTTGCCGGTGATTGGCATGACCTTATTCATGAGGACTGGTTCAAGATCATTCACGAATGAGTCCGCAGTGATTGGAATCT
TTGAAAAGGAGTGCGCTAAGGTAGATGGATGCAGGTTGATGGTGGCATACTCCAACAATCTAACATTTTGTGAGCAGGTGAAGATGATGAGCTTGACAGA
TATTCTGGTATCTACTCATGGTGCTCAATTAACCAACATGTTTCTCATGGACAAAAACAGCAGTGTCATGGAGTTCTTCCCCAAGGGATGGTTAAAAGTT
GCTGGCGTAGGCCAATATGTTTATCATTGGATTGCTAGCTGGTCTGGGATGCGACACCAAGGCGCATGGCGGGACCTTAACGGCGATGAATGCCCCTACG
CCGAAGATGACCGCCGGTGCATGTCAATTTACAAGAATGGCAAGGTTGGATTCAATGAAACTTACTTTTCTGAGTGGGCTAGAGATGTTCTCAATGAAGT
CAAAATAAGGAAGTTGGAGGAGGCAGCAAGTAAAACCATTGCTTCAACTTCTGCTTGTTCTTGTGGCTAG
AA sequence
>Potri.017G048300.1 pacid=42814484 polypeptide=Potri.017G048300.1.p locus=Potri.017G048300 ID=Potri.017G048300.1.v4.1 annot-version=v4.1
MAKSTVELSRPANPTLKKPSFPKKRTTMSVFCLYSPKLSIFLLALCVSLFTLYHIQSLHARTTSSPPWSFVHQWERFTNCTQEHGSMAEKLRQSVTFLPL
KDLRYADKARQGHTWFMSSTYDTREEGGVQYQQFPSESSKRRLLCLKGKETHDGSWNSYALAWPEALPFNATLLKGLTFVSYNHYDYDNIWHGLSAMVPF
VAWHIRNGCESPSRWILYHWGELRFEMGPWLRTLTGATFGGAPYTESFEGVNDGQPLCFEKAVVMRHNEGGMSRDRRTETYDLMRCKARMYCNVSLEGRI
PEVNKQGLPVIGMTLFMRTGSRSFTNESAVIGIFEKECAKVDGCRLMVAYSNNLTFCEQVKMMSLTDILVSTHGAQLTNMFLMDKNSSVMEFFPKGWLKV
AGVGQYVYHWIASWSGMRHQGAWRDLNGDECPYAEDDRRCMSIYKNGKVGFNETYFSEWARDVLNEVKIRKLEEAASKTIASTSACSCG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G33600 unknown protein Potri.017G048300
[exp]
0 1
Potri.012G053400
[exp]
15.03 0.8770
AT5G05810 ATL43 RING/U-box superfamily protein... Potri.015G056800
[exp]
40.24 0.8569
AT5G39240 unknown protein Potri.004G119600
[exp]
58.88 0.8533
AT2G23910 NAD(P)-binding Rossmann-fold s... Potri.013G079500
[exp]
65.26 0.8489
AT5G46690 bHLH bHLH071 beta HLH protein 71 (.1) Potri.001G141100
[exp]
74.86 0.8309
AT3G52610 unknown protein Potri.006G210800
[exp]
79.96 0.8474
AT1G65880 BZO1 benzoyloxyglucosinolate 1 (.1) Potri.017G138350
[exp]
82.26 0.8474
AT5G54010 UDP-Glycosyltransferase superf... Potri.006G179700
[exp]
87.41 0.8445
AT3G54420 ATCHITIV, CHIV,... CHITINASE CLASS IV, homolog of... Potri.019G094000
[exp]
94.71 0.8434
AT2G18360 alpha/beta-Hydrolases superfam... Potri.009G117000
[exp]
103.05 0.8416

Potri.017G048300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.