Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12680 471 / 5e-164 PEPKR2 phosphoenolpyruvate carboxylase-related kinase 2 (.1) AT1G12580 242 / 3e-74 PEPKR1 phosphoenolpyruvate carboxylase-related kinase 1 (.1) AT4G04720 230 / 2e-69 CPK21 calcium-dependent protein kinase 21 (.1) AT2G38910 227 / 6e-68 CPK20 calcium-dependent protein kinase 20 (.1) AT1G76040 226 / 8e-68 CPK29 calcium-dependent protein kinase 29 (.1.2) AT1G61950 226 / 2e-67 CPK19 calcium-dependent protein kinase 19 (.1) AT5G12180 223 / 5e-67 CPK17 calcium-dependent protein kinase 17 (.1) AT2G35890 221 / 3e-66 CPK25 calcium-dependent protein kinase 25 (.1) AT5G04870 223 / 5e-66 AK1, ATCPK1, CPK1 calcium dependent protein kinase 1 (.1) AT1G50700 221 / 6e-66 CPK33 calcium-dependent protein kinase 33 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G112400 [exp] 795 / 0 AT1G12680 492 / 4e-172 phosphoenolpyruvate carboxylase-related kinase 2 (.1) Potri.005G251500 [exp] 526 / 0 AT1G12680 662 / 0.0 phosphoenolpyruvate carboxylase-related kinase 2 (.1) Potri.012G134600 [exp] 239 / 7e-73 AT1G12580 569 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Potri.003G120800 [exp] 231 / 5e-70 AT1G12580 605 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Potri.001G274700 [exp] 229 / 5e-69 AT5G12180 909 / 0.0 calcium-dependent protein kinase 17 (.1) Potri.013G112500 [exp] 228 / 1e-68 AT1G35670 815 / 0.0 calcium-dependent protein kinase 2 (.1) Potri.004G015500 [exp] 226 / 5e-68 AT4G04720 797 / 0.0 calcium-dependent protein kinase 21 (.1) Potri.016G065700 [exp] 228 / 7e-68 AT2G38910 892 / 0.0 calcium-dependent protein kinase 20 (.1) Potri.010G244800 [exp] 226 / 1e-67 AT5G04870 899 / 0.0 calcium dependent protein kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036464 [exp] 474 / 3e-165 AT1G12680 607 / 0.0 phosphoenolpyruvate carboxylase-related kinase 2 (.1) Lus10041132 [exp] 469 / 2e-163 AT1G12680 608 / 0.0 phosphoenolpyruvate carboxylase-related kinase 2 (.1) Lus10015009 [exp] 235 / 1e-71 AT1G12580 549 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Lus10038889 [exp] 234 / 5e-71 AT1G12580 555 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Lus10008958 [exp] 228 / 5e-69 AT5G04870 877 / 0.0 calcium dependent protein kinase 1 (.1) Lus10028862 [exp] 229 / 3e-68 AT5G04870 940 / 0.0 calcium dependent protein kinase 1 (.1) Lus10015992 [exp] 227 / 1e-67 AT2G38910 880 / 0.0 calcium-dependent protein kinase 20 (.1) Lus10032640 [exp] 224 / 3e-67 AT3G20410 790 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10021531 [exp] 224 / 4e-67 AT3G20410 831 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10029346 [exp] 223 / 1e-66 AT2G38910 834 / 0.0 calcium-dependent protein kinase 20 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.017G048400.1 pacid=42813918 polypeptide=Potri.017G048400.1.p locus=Potri.017G048400 ID=Potri.017G048400.1.v4.1 annot-version=v4.1 ATGGAGTCCTTAAGGAGGAAGAGAAAGGGCCTAGAAATTTTGCCTTCATCTGGCAAGTCCCTCCCTCCATTAACAGTTATTTTGTCGCACTTTTCATTGG GAGATTATTCAAGGCAGAGGAAGAAGTACAAGGAAGGTGAGGATAAAGAAGTTGTAGGTTCTGGTAGAAGTGTAGTTAAAGGTGTTTTCACTGTTCCACC CTGTAGGAGTGTCTCTGCAGATCCATCTTGTAGGGGTCTTAAGAGGAAAATTGGCTGTATTGATGCAGCGACTCAATTGGGCAGGAAGAAAAAAATTGAG GAAGAGTATGACTTGGGTGCATATATTGGGCAAGGAAAGTTTGGGTCAGTGGTTCTGTGTAGAAGTAAAGTGACTGGAGAAGTGTTTGCGTGCAAAATGC TGCGCAAGGGAGAGGAACTTGTGCATCGGGAAGTGGAAATTATGCAGCACCTCTCAGGTCATCCTGGTGTTGTGACATTGAAGGCAGTGTATGAGGATTT AGAATCTTTTTATCTTGTGATGGAGCTCTGTCCCGAGGGACGGTTGCTGGACAAGATGGCTAAGGAAAGGCAGTATCCAGAGCACAGAGCTGCTAATATT CTTAAGGAAATTGTTTCAGTTATCAAATATTGCCATGACATGGGCGTTGTTCATCGGGACGTAAAGCCAGAAAATATCCTCCTTGCAACCTCTGGGAAGA TGAAGCTAGCTGACTTTGGTCTAGCTGTGAGGATGTCAAATGGTCAGAGCCTCAGAGGTGCAGTTGGAAGTCCTGCTTATGTTGCTCCAGAAGTTTTAGC CGGTGATTATTCCGAAAAGGTTGATATCTGGAGTGCTGGTGTCCTGCTTCATGCTCTGTTGGTTGGTGTGCTTCCATTTCAAGGTGATTCGTTGGAAGCT GTGTTTGAGGCCATTAAGAAGGTCAACCTTGACTTCAAAAGTGAATTATGGGAATCAGTATCTCAACCTGCACGGGATTTGATTGCTCATATGTTGACGA GGGATGTTTCAGCAAGACTAACTGCTGATGAAATACTTGGACATCCATGGATCGTGTTCTATACAGAACCAACACAAAAGGAACTTACCCCAAAATCAAA GTTTCAAGACCATGTAACACTGACTTCTCAACAACTAACTCTCGCAACTGAATTGGAGTCGGATCGATCCAAGATAACAGCCAGTGGCTTTCTCAGTGAT GACTGTAGCCCACTTTTATCATCTGATGGTTCAAGGTCAAGGTTGGAAGAGCACGACTGTGGATTGATTGATGCTCTCACAGCGGCAATATCACGAGTGA GGATATCTGAGCCAAAGAGAAGCAGGTTGTGTTGGCCTACAAGCCCTATCCGGCAAGAGTGTTCCTCTAACATTAAGATTAACAACCTCTGTACAGCATT TTGA
AA sequence Show only first row Show all	>Potri.017G048400.1 pacid=42813918 polypeptide=Potri.017G048400.1.p locus=Potri.017G048400 ID=Potri.017G048400.1.v4.1 annot-version=v4.1 MESLRRKRKGLEILPSSGKSLPPLTVILSHFSLGDYSRQRKKYKEGEDKEVVGSGRSVVKGVFTVPPCRSVSADPSCRGLKRKIGCIDAATQLGRKKKIE EEYDLGAYIGQGKFGSVVLCRSKVTGEVFACKMLRKGEELVHREVEIMQHLSGHPGVVTLKAVYEDLESFYLVMELCPEGRLLDKMAKERQYPEHRAANI LKEIVSVIKYCHDMGVVHRDVKPENILLATSGKMKLADFGLAVRMSNGQSLRGAVGSPAYVAPEVLAGDYSEKVDIWSAGVLLHALLVGVLPFQGDSLEA VFEAIKKVNLDFKSELWESVSQPARDLIAHMLTRDVSARLTADEILGHPWIVFYTEPTQKELTPKSKFQDHVTLTSQQLTLATELESDRSKITASGFLSD DCSPLLSSDGSRSRLEEHDCGLIDALTAAISRVRISEPKRSRLCWPTSPIRQECSSNIKINNLCTAF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G12680		PEPKR2	phosphoenolpyruvate carboxylas...		Potri.017G048400 [exp]	0	1
AT2G24610		ATCNGC14	cyclic nucleotide-gated channe...		Potri.006G271480 [exp]	3.46	0.7827
AT5G47900			Protein of unknown function (D...		Potri.014G123800 [exp]	6.32	0.7293
AT3G14470			NB-ARC domain-containing disea...		Potri.014G003350 [exp]	7.48	0.7919
AT3G18670			Ankyrin repeat family protein ...		Potri.011G015750 [exp]	11.83	0.7661
AT3G18670			Ankyrin repeat family protein ...		Potri.006G281600 [exp]	12.36	0.7480
AT2G28070		ABCG3	ATP-binding cassette G3, ABC-2...		Potri.004G214000 [exp]	15.81	0.7196
AT2G21070		FIO1	FIONA1, methyltransferases (.1...		Potri.009G131700 [exp]	20.59	0.7485
AT5G08391			Protein of unknown function (D...		Potri.001G329000 [exp]	22.44	0.6792
AT1G23360		MENG	S-adenosyl-L-methionine-depend...		Potri.010G043601 [exp]	24.37	0.7123
AT5G24750			UDP-Glycosyltransferase superf...		Potri.003G021100 [exp]	26.49	0.7181

Compare expression of checked genes

Potri.017G048400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.