Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09450 445 / 1e-155 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02820 203 / 6e-60 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G27460 188 / 9e-55 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G20710 180 / 9e-52 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G60770 174 / 2e-49 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21705 171 / 3e-48 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02150 165 / 1e-45 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02370 158 / 4e-43 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G01990 143 / 6e-38 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G28020 124 / 1e-30 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G120900 [exp] 211 / 4e-63 AT4G21705 483 / 8e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G208900 [exp] 202 / 9e-60 AT4G02820 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G160100 [exp] 195 / 6e-57 AT5G27460 532 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G132500 [exp] 183 / 6e-53 AT2G20710 388 / 4e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.002G139400 [exp] 184 / 7e-53 AT1G02150 714 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G063300 [exp] 182 / 2e-52 AT2G20710 345 / 1e-113 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.014G050300 [exp] 181 / 8e-52 AT1G02150 698 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G042500 [exp] 179 / 2e-51 AT4G21705 608 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G133000 [exp] 174 / 8e-50 AT2G20710 310 / 1e-100 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029043 [exp] 515 / 0 AT5G09450 443 / 1e-154 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10034221 [exp] 514 / 0 AT5G09450 453 / 1e-158 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042574 [exp] 185 / 4e-53 AT4G02820 565 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016229 [exp] 180 / 1e-52 AT2G20710 269 / 7e-86 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10008724 [exp] 180 / 2e-51 AT5G27460 492 / 6e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024781 [exp] 178 / 2e-50 AT1G02150 599 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009787 [exp] 178 / 2e-50 AT1G02150 600 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10005855 [exp] 177 / 2e-50 AT4G21705 503 / 5e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001213 [exp] 177 / 3e-50 AT4G21705 500 / 2e-174 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003590 [exp] 173 / 6e-49 AT4G21705 434 / 2e-148 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain
Representative CDS sequence Show only first row Show all	>Potri.017G048500.2 pacid=42814044 polypeptide=Potri.017G048500.2.p locus=Potri.017G048500 ID=Potri.017G048500.2.v4.1 annot-version=v4.1 ATGGCATCTGGGTCGCTCTTCCTCTCTCTCACAAGATCCAAACTGAGATCTCTATGTGCATTAGAGAAATGGAAACCTGTTAGGTTTCTTTCTTCAGGTG GTGCTTTAAGAAGTGAAAGTGAAATCCTTGAAGAAGAGGAATTGAAATCAAAGGAAAATGAAGATGACTTGAAGGGTAGAATTTTCAGGCTTAGACTACC GAAGAGAAGTGTAACAAATGTTATAGATAAATGGGTCAGAGAAGGAAACACTGTTTCTTCTTCTGAGTTAAGGCATATCTCTAAAGAGCTAAGGAAGTCT CAGCGTTTCAAGCATGCACTTGAGATATCAGAATGGATGGTTGCACATGAAGAATTTGAGTTATCTGACACTGACCATGCAAGCCGTATTGACTTGATGA CAAAAGTTTTTGGTGTTGATGCTGCTGAGCGCTACTTTGATGGTTTACCTCTTGCAGCAAAAACTACTGAAACCTACACTGCTCTCCTCCACTCTTATGC TGCGGCAAAATTGATTGAAAAGGCTGAGGAATTTTACAAGAGAATAAAGGGATCAAACTTGCCCTTCACTGCTCTCATGTACAATGAGATGATGACTTTA TACATGTCAGTTGGACAGCTGGAGAAAGTCTCTCAAGTTGTTGAAGAACTGAAACATCAGAAGGTTGCTCCAGATATCTTCACTTACAATCTCTGGATAA GTTCATGTGCTGCAGCTCTAAATATTGATAAAGTTAGAAGGATTTTGGATGAGATGAGCCAAGACTCCGGTGTTAATGATGATTGGATGAGATACATTAA GATAGTGAACATATATGTCACAGCAGGTCATCTTGTGAATGCAGAGTCCAGCACTGCCGCTGTAGTCGAAGCCGAGAAAAAAATCACTCAAAGAGAATGG ATAACGTATGATTTCCTTGTTATCCTATATGCAGGTTTAGGAAAGAAAGATAAAATCGACCAAATCTGGAAATCCCTGAGAATGACTAACCAGAAAATGA CGAGCAGAAACTTTGTATGCATTCTTTCTTCATATCTGATGCTTGGACATTTGAAAGAAGTGGGAGAAATTGTTGATCAATGGAAACAATCAACCACTAC AGACTTTGATATCTCTGCATGCAATAGGCTTTTGGACGCGATCTCTTGTTTGGGACTAACTGAAATTGCCAACAACTTCCATATGCTACTGATTGAAAGG AATTGTGACCCCAAACATATATCAGAGTAA
AA sequence Show only first row Show all	>Potri.017G048500.2 pacid=42814044 polypeptide=Potri.017G048500.2.p locus=Potri.017G048500 ID=Potri.017G048500.2.v4.1 annot-version=v4.1 MASGSLFLSLTRSKLRSLCALEKWKPVRFLSSGGALRSESEILEEEELKSKENEDDLKGRIFRLRLPKRSVTNVIDKWVREGNTVSSSELRHISKELRKS QRFKHALEISEWMVAHEEFELSDTDHASRIDLMTKVFGVDAAERYFDGLPLAAKTTETYTALLHSYAAAKLIEKAEEFYKRIKGSNLPFTALMYNEMMTL YMSVGQLEKVSQVVEELKHQKVAPDIFTYNLWISSCAAALNIDKVRRILDEMSQDSGVNDDWMRYIKIVNIYVTAGHLVNAESSTAAVVEAEKKITQREW ITYDFLVILYAGLGKKDKIDQIWKSLRMTNQKMTSRNFVCILSSYLMLGHLKEVGEIVDQWKQSTTTDFDISACNRLLDAISCLGLTEIANNFHMLLIER NCDPKHISE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G09450			Tetratricopeptide repeat (TPR)...		Potri.017G048500 [exp]	0	1
AT3G48890		MSBP2, ATMP2, A...	MEMBRANE STEROID BINDING PROTE...		Potri.012G137800 [exp]	2.00	0.7830	MP2.4
AT4G35360			Uncharacterised conserved prot...		Potri.004G207700 [exp]	5.65	0.7698
AT3G20390			endoribonuclease L-PSP family ...		Potri.001G435700 [exp]	6.70	0.7928
AT1G08880		HTA5 ,G-H2AX ,G...	histone H2A 5, gamma histone v...		Potri.005G040700 [exp]	8.12	0.7949
AT5G02440			unknown protein		Potri.006G084400 [exp]	8.77	0.7472
AT1G10180			unknown protein		Potri.015G118500 [exp]	15.65	0.7140
AT5G64140		RPS28	ribosomal protein S28 (.1)		Potri.010G245400 [exp]	15.68	0.7811	Pt-RPS28.1
AT1G28510			Optic atrophy 3 protein (OPA3)...		Potri.011G059800 [exp]	16.52	0.7109
AT1G06475			unknown protein		Potri.005G203800 [exp]	19.49	0.7617
AT3G22960		PKP-ALPHA, PKP1	PLASTIDIAL PYRUVATE KINASE 1, ...		Potri.009G084700 [exp]	22.75	0.7432

Compare expression of checked genes

Potri.017G048500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.