Plant FIBer expression Database

Potri.017G048600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G05440 404 / 4e-141 EDA35 embryo sac development arrest 35, temperature sensing protein-related (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G112300
[exp]
558 / 0 AT4G05440 390 / 3e-136 embryo sac development arrest 35, temperature sensing protein-related (.1.2)
Potri.017G049500
[exp]
103 / 2e-27 AT4G05440 63 / 1e-13 embryo sac development arrest 35, temperature sensing protein-related (.1.2)
Potri.006G050600
[exp]
0 / 1 AT4G05440 0 / 1 embryo sac development arrest 35, temperature sensing protein-related (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027954
[exp]
419 / 9e-147 AT4G05440 419 / 1e-147 embryo sac development arrest 35, temperature sensing protein-related (.1.2)
Lus10006898
[exp]
415 / 3e-145 AT4G05440 418 / 4e-147 embryo sac development arrest 35, temperature sensing protein-related (.1.2)
Lus10027955
[exp]
136 / 2e-39 AT4G05440 132 / 6e-39 embryo sac development arrest 35, temperature sensing protein-related (.1.2)
Lus10000812
[exp]
132 / 7e-38 AT4G05440 133 / 7e-39 embryo sac development arrest 35, temperature sensing protein-related (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0179 ATP-grasp PF07065 D123 D123
Representative CDS sequence
>Potri.017G048600.4 pacid=42813406 polypeptide=Potri.017G048600.4.p locus=Potri.017G048600 ID=Potri.017G048600.4.v4.1 annot-version=v4.1
ATGTGGGAACACAACCATGAATTGGTGGTTATTGTTTTTTCAAGTGATCACATCATCTTCTTCAGAAGTGACCTTATAGCAGGAGAAGCAATTAAACCAG
GGACAATGAAGGAAGAAGATGTGAATTGTTGCCAGATTCAGGAATGGTACCCAAAATTCAAGTCTGGATCCATTAAAACAGTAATCCATGAACTTCCAGA
ATCTTTTGTCGAGTACCTTCTTGATGATTCTGGTCCTTTCCTCCTCCCTCATTCTATCTCAGGCGAAGATGCCCTGCCCAATAGAATTCACAACCCTGTA
GATGAAGAAGACTTTCAGGTGTCAGAAGGATCTGGAGATGAATCAGAACAACCACCATTGCCCCCTTCTTTCCCAGAACTTGAATTGAACATTAAGGAGT
CAATTAAAACCCTTGGAGGTGCAGTTTTTCCTAAGCTGAACTGGAGTGCTCCAAAAGACTCTGCTTGGATAAGTCCATCTGGTTCCCTTCGCTGCACTTC
GTTCAGTGAGATAGCATTATTGCTTCGGTCATCTGACTCACTGGTCCATGATTTGTGTCACGCCTATGACACATGCAGTGACAAAACCTTGTCAAGACCC
CCAAGTTTCTTTCTTGCTCTTCGCAAGTGGTATTCATCTTTCTTGCCTGAGATGGAATTTCGTTGCTTTGTTCGGGATAAGCAACTAGTTGGAATTTCAC
AGAGAGAAGTGACTACATTTTATCCCACACTCCTTGAGAAGAAAAATGACCTTCTATGGTTGATTGAGGAATTTTTCACAGATAACGTGAGACTAAAATT
TGAATCAGAAAATTACACCTTTGATGTCTATGTGATGAAGGATGGGCGTGCTAAGATATTGGATTTTAACCCATGGGGTGCATTTACACTCCCGCTGCTT
TTTACCTGGGAGGAACTGGAGCAGAATCTCAGGGAAGAGGAGGATGGGGTGAATTTCAGAATCGTGGAGAACCAGTGTGGAATTCGGCCAGGTCTGAAAA
CAGCAGTCCCGCGAGATTACTTGGATACTAGCCCAGGGAGTGGTTGGGACCAGTTCTTGAGGAAGGCTGACAAGGAGTTGCGGGAGCAGAAAAGGTCTCC
TGAAAACGGTGCCTGA
AA sequence
>Potri.017G048600.4 pacid=42813406 polypeptide=Potri.017G048600.4.p locus=Potri.017G048600 ID=Potri.017G048600.4.v4.1 annot-version=v4.1
MWEHNHELVVIVFSSDHIIFFRSDLIAGEAIKPGTMKEEDVNCCQIQEWYPKFKSGSIKTVIHELPESFVEYLLDDSGPFLLPHSISGEDALPNRIHNPV
DEEDFQVSEGSGDESEQPPLPPSFPELELNIKESIKTLGGAVFPKLNWSAPKDSAWISPSGSLRCTSFSEIALLLRSSDSLVHDLCHAYDTCSDKTLSRP
PSFFLALRKWYSSFLPEMEFRCFVRDKQLVGISQREVTTFYPTLLEKKNDLLWLIEEFFTDNVRLKFESENYTFDVYVMKDGRAKILDFNPWGAFTLPLL
FTWEELEQNLREEEDGVNFRIVENQCGIRPGLKTAVPRDYLDTSPGSGWDQFLRKADKELREQKRSPENGA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G05440 EDA35 embryo sac development arrest ... Potri.017G048600
[exp]
0 1
AT5G07900 Mitochondrial transcription te... Potri.015G038500
[exp]
1.00 0.9269
AT2G36730 Pentatricopeptide repeat (PPR)... Potri.017G083900
[exp]
2.44 0.9257
AT2G20710 Tetratricopeptide repeat (TPR)... Potri.013G133000
[exp]
5.29 0.8856
AT5G10620 methyltransferases (.1) Potri.006G278500
[exp]
6.63 0.8793
AT3G26782 Tetratricopeptide repeat (TPR)... Potri.001G322100
[exp]
7.34 0.8867
AT3G14930 HEME1 Uroporphyrinogen decarboxylase... Potri.011G109800
[exp]
9.48 0.8514
AT1G53903 Protein of unknown function (D... Potri.003G071900
[exp]
10.39 0.8004
AT3G13160 Tetratricopeptide repeat (TPR)... Potri.004G030000
[exp]
11.48 0.8768
AT3G04130 Tetratricopeptide repeat (TPR)... Potri.008G179201
[exp]
11.87 0.8363
Potri.001G029000
[exp]
11.95 0.8760

Potri.017G048600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.