Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36690 255 / 2e-82 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G44800 237 / 3e-75 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10490 231 / 2e-73 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G60290 228 / 9e-72 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10500 218 / 5e-68 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G24530 202 / 6e-62 DMR6 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G17010 194 / 7e-59 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 194 / 2e-58 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G17020 189 / 1e-56 ATSRG1, SRG1 senescence-related gene 1 (.1) AT4G25300 188 / 1e-56 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G048900 [exp] 728 / 0 AT2G36690 250 / 5e-80 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G049000 [exp] 558 / 0 AT2G36690 209 / 5e-65 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G231500 [exp] 250 / 4e-80 AT2G36690 474 / 3e-168 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.008G029700 [exp] 250 / 4e-80 AT2G36690 478 / 1e-169 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451700 [exp] 246 / 6e-79 AT4G10500 451 / 6e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.005G185000 [exp] 245 / 8e-79 AT2G36690 147 / 5e-41 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G150100 [exp] 239 / 2e-76 AT4G10490 501 / 2e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451900 [exp] 227 / 1e-71 AT4G10490 498 / 3e-178 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G080600 [exp] 225 / 9e-71 AT5G07480 453 / 9e-161 KAR-UP oxidoreductase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001711 [exp] 328 / 2e-112 AT2G36690 204 / 3e-64 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10030185 [exp] 240 / 9e-77 AT4G10490 442 / 3e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10032502 [exp] 223 / 9e-70 AT5G07480 396 / 3e-138 KAR-UP oxidoreductase 1 (.1) Lus10023890 [exp] 221 / 8e-69 AT2G36690 486 / 5e-173 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10014398 [exp] 220 / 1e-68 AT2G36690 482 / 4e-171 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10015573 [exp] 213 / 3e-66 AT5G24530 510 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10001460 [exp] 210 / 3e-65 AT2G36690 149 / 7e-42 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10032930 [exp] 206 / 1e-63 AT5G24530 504 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10015252 [exp] 203 / 4e-62 AT1G17020 375 / 1e-129 senescence-related gene 1 (.1) Lus10011980 [exp] 199 / 1e-60 AT1G17020 382 / 1e-132 senescence-related gene 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF03171 [poplar] [flax] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily CL0029 [poplar] [flax] Cupin PF14226 [poplar] [flax] DIOX_N non-haem dioxygenase in morphine synthesis N-terminal
Representative CDS sequence Show only first row Show all	>Potri.017G048700.2 pacid=42813441 polypeptide=Potri.017G048700.2.p locus=Potri.017G048700 ID=Potri.017G048700.2.v4.1 annot-version=v4.1 ATGGCTGCTGAAACAGCTTCCCTTCTTCCCTCCCAAGCATTTCCTAGTCAACCTACCAAGATAACAAGCATCAAAACGTTAGCTGAATCTCCTGGTCTCA CCTCCATCCCTGCCACTTACACCTTCACTCCTGATCTCCATGACCAAGTAATTTGTGTCCCAGAAGGCTCCATTCCTGTCATAGATTACTCTCTTCTTAT TTCAGGCACTCCCGATCAACGGTCTAAAATAGTTCATGAACTTGGCAGAGCCTGTCAGGACTGGGGCTTCTTCATGGTGATCAATCATGGGGTGCCAGAG AACCTTCTCAGCTCGATACTGGATGGGTGTAAAGGTTTTTTTGATCTGCCAGAAGAGGAGAAGCAAGAGTTTAAAGGGAACCATGTATTGGACCCAATAA GGTCTGGCACCAGCTGTAATGTTTCAGTGGAAAAGGCTTTCTATTGGAGGGATTTTCTCAAGGTCTTTGTACATCCTGTGTTCTACTCACCTACCAAGCC TGCTGGCCTCAGTGAGATTTCATTAGAGTACTCCCAAAGAGTTAGAGAAGTAGCAAGGGGGTTACTGAAAGGAATATCAGAAAGTTTGGGATTGGAAGGA AGCTACATAGACAAGGCACAGAATTTGGAACAGGGGAAACAAATATTTGTTGGAAACTTGTATCCAACTTGTCCACAGCCAGAGCTTGCAATGGGCTTGC CCCCTCATTCAGATCATGGCTTGTTGACACTTCTAATCTACAATGGAATTGGTGGCCTTCAAATTCAACACGAAGGGAAGTGGGTCAATGTCTGTGCCCT CCCCAACTCCTTCCTGGTTAACACTGGAGATCACCTTGAGATTTTGAGCAATGGAAGGTACAAGAGTGTTCTGCACCGAGCAATGGTGAACAACAAGGCT ACAAGGATATCCATAGCTATGGCACATGGACCATCACTAGACTCGGTCGTTAGCCCAGCACCAGAGTTATTAGTGAGCAGTAAAGGCAATGAACCAGCAG CATACGCTGGCATGAAATACAAAGACTACCTGGAAATTCAGCAAAGCAACAAGCTGGATGGGAAATCTTGCTTGGATCGAGTTCGAATTCCAGCAGTTTA G
AA sequence Show only first row Show all	>Potri.017G048700.2 pacid=42813441 polypeptide=Potri.017G048700.2.p locus=Potri.017G048700 ID=Potri.017G048700.2.v4.1 annot-version=v4.1 MAAETASLLPSQAFPSQPTKITSIKTLAESPGLTSIPATYTFTPDLHDQVICVPEGSIPVIDYSLLISGTPDQRSKIVHELGRACQDWGFFMVINHGVPE NLLSSILDGCKGFFDLPEEEKQEFKGNHVLDPIRSGTSCNVSVEKAFYWRDFLKVFVHPVFYSPTKPAGLSEISLEYSQRVREVARGLLKGISESLGLEG SYIDKAQNLEQGKQIFVGNLYPTCPQPELAMGLPPHSDHGLLTLLIYNGIGGLQIQHEGKWVNVCALPNSFLVNTGDHLEILSNGRYKSVLHRAMVNNKA TRISIAMAHGPSLDSVVSPAPELLVSSKGNEPAAYAGMKYKDYLEIQQSNKLDGKSCLDRVRIPAV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Potri.017G048700 [exp]	0	1
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Potri.017G048900 [exp]	1.00	0.8939
					Potri.001G077040 [exp]	2.44	0.8719
AT5G27410			D-aminoacid aminotransferase-l...		Potri.005G039100 [exp]	2.82	0.8646	Pt-AAT.3
AT3G06850		DIN3, LTA1, BCE...	DARK INDUCIBLE 3, 2-oxoacid de...		Potri.010G011300 [exp]	4.00	0.8789
AT1G72040			P-loop containing nucleoside t...		Potri.019G081600 [exp]	8.12	0.8596
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Potri.013G047900 [exp]	10.09	0.8243
AT5G36930			Disease resistance protein (TI...		Potri.001G066500 [exp]	12.00	0.8509
AT1G34370	C2H2ZnF	STOP1	sensitive to proton rhizotoxic...		Potri.013G114600 [exp]	13.41	0.8638
AT3G19490		ATNHD1	ARABIDOPSIS THALIANA NA/H ANTI...		Potri.009G096700 [exp]	16.88	0.8234
AT4G14880		OLD3, CYTACS1, ...	ONSET OF LEAF DEATH 3, O-acety...		Potri.013G035200 [exp]	18.33	0.8382

Compare expression of checked genes

Potri.017G048700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.