Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36690 208 / 7e-65 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G44800 192 / 1e-58 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G60290 180 / 5e-54 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10490 171 / 8e-51 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10500 167 / 3e-49 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G24530 161 / 5e-47 DMR6 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 157 / 1e-44 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G59530 156 / 1e-44 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06620 151 / 5e-43 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G25300 148 / 7e-42 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G048700 [exp] 558 / 0 AT2G36690 255 / 3e-82 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G048900 [exp] 555 / 0 AT2G36690 250 / 5e-80 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G231500 [exp] 204 / 4e-63 AT2G36690 474 / 3e-168 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.008G029700 [exp] 200 / 2e-61 AT2G36690 478 / 1e-169 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451700 [exp] 194 / 2e-59 AT4G10500 451 / 6e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G150100 [exp] 187 / 6e-57 AT4G10490 501 / 2e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.005G185000 [exp] 182 / 8e-55 AT2G36690 147 / 5e-41 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451600 [exp] 179 / 8e-54 AT4G10500 406 / 5e-142 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.014G106700 [exp] 176 / 1e-52 AT4G10490 468 / 2e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001711 [exp] 236 / 9e-77 AT2G36690 204 / 3e-64 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10030185 [exp] 196 / 4e-60 AT4G10490 442 / 3e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10023890 [exp] 188 / 9e-57 AT2G36690 486 / 5e-173 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10014398 [exp] 188 / 9e-57 AT2G36690 482 / 4e-171 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10032502 [exp] 173 / 2e-51 AT5G07480 396 / 3e-138 KAR-UP oxidoreductase 1 (.1) Lus10015573 [exp] 170 / 3e-50 AT5G24530 510 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10032930 [exp] 165 / 3e-48 AT5G24530 504 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022190 [exp] 159 / 1e-46 AT1G06620 323 / 6e-110 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022196 [exp] 158 / 2e-45 AT5G59530 420 / 5e-147 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022191 [exp] 157 / 4e-45 AT1G06620 456 / 3e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF03171 [poplar] [flax] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily CL0029 [poplar] [flax] Cupin PF14226 [poplar] [flax] DIOX_N non-haem dioxygenase in morphine synthesis N-terminal
Representative CDS sequence Show only first row Show all	>Potri.017G049000.4 pacid=42813989 polypeptide=Potri.017G049000.4.p locus=Potri.017G049000 ID=Potri.017G049000.4.v4.1 annot-version=v4.1 ATGGCTGCTGAAACAGCTTCCCTTCTGCCCTCCCAAGCATTTCCTAGTCAACCTACCAAGATAACAAGCATCAAAACGTTAGCTGAATCTCCTGGTCTCA CCTCCATCCCCGCCACTTACACCTTCACTCCTGATCTCCATGACCACGTAACTTGTGTCCCAGAAGGCTCCATTCCTGTCATAGATTACTCTCTTCTTAT TTCAGGCACTCCCGATCAACGGTCTAAAATAGTTCATGAACTTGGCAGAGCCTGTCAGGACTGGGGCTTCTTCATGGTGATCAATCATGGGGTGCCGGAG AACCTTCTCAGCTCGATACTTGATGGGTGTAAAGGTTTTTTTGATCTGCCAGAAGAGGAGAAGCAAGAGTTTAAAGGGAACCATGTATTGGACCCAATAA GGTCTGGCACCAGCTTCAATGTTTCAGTGGAAAAGGCTTTCTATTGGAGGGATTTTCTCAAGGTCTTTGTACATCCTGTGTTCTACTCACCTACCAAACC TGCTGGCCTCAGTGAGATTTCATTAGAGTACTCCCAAAGAGTTAGAGAAGTAGCAAGGGGGTTACTGAAAGGAATATCAGAAAGTTTGGGATTGGAAGGA AGCTACATAGACAAGGCACTGAATTTGGAACAGGGGAAACAAATATTTATTGCAAACTTGTATCCAACTTGTCCACAGCCAGAGCTTGCAATGGGCATGC CCCCTCATTCAGATCATGGATTTTTGACACTCCTAATCCAAAATGGAATTGGTGGCCTTCAAATTCAGCACAAAGGGAAGTGGGTCGATGTCGGTGCCCT CCCCAACTCCTTCCTGGTTAACACTGGAGATCACCTCGAGGTGCATTCTGACTTCCTGGTCATGTTATCCTTTATCACAATTAGGCTTGGAGTCGATCCA AGATTCCTAAGGCTTAATAATTCTGTTAAAAATGCGAAGTTCTTGTTTTTTTGTTACTAG
AA sequence Show only first row Show all	>Potri.017G049000.4 pacid=42813989 polypeptide=Potri.017G049000.4.p locus=Potri.017G049000 ID=Potri.017G049000.4.v4.1 annot-version=v4.1 MAAETASLLPSQAFPSQPTKITSIKTLAESPGLTSIPATYTFTPDLHDHVTCVPEGSIPVIDYSLLISGTPDQRSKIVHELGRACQDWGFFMVINHGVPE NLLSSILDGCKGFFDLPEEEKQEFKGNHVLDPIRSGTSFNVSVEKAFYWRDFLKVFVHPVFYSPTKPAGLSEISLEYSQRVREVARGLLKGISESLGLEG SYIDKALNLEQGKQIFIANLYPTCPQPELAMGMPPHSDHGFLTLLIQNGIGGLQIQHKGKWVDVGALPNSFLVNTGDHLEVHSDFLVMLSFITIRLGVDP RFLRLNNSVKNAKFLFFCY

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Potri.017G049000 [exp]	0	1
AT2G22570		NIC2, ATNIC1	A. THALIANA NICOTINAMIDASE 1, ...		Potri.007G116100 [exp]	1.41	0.9120
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.003G219900 [exp]	2.82	0.9026
AT2G21620		RD2	Adenine nucleotide alpha hydro...		Potri.004G156200 [exp]	3.00	0.9073	Pt-RD2.2
AT2G17650			AMP-dependent synthetase and l...		Potri.005G099500 [exp]	3.87	0.8882
AT3G13080		EST2, ATMRP3, A...	MULTIDRUG RESISTANCE PROTEIN 3...		Potri.003G198401 [exp]	5.00	0.9008
AT4G16480		ATINT4	inositol transporter 4 (.1)		Potri.006G015200 [exp]	6.08	0.8660
AT3G03980			NAD(P)-binding Rossmann-fold s...		Potri.013G059100 [exp]	6.70	0.8960
AT1G27290			unknown protein		Potri.001G058100 [exp]	8.48	0.8904
AT1G25350		OVA9	ovule abortion 9, glutamine-tR...		Potri.008G122200 [exp]	11.83	0.8889
AT2G47820			unknown protein		Potri.008G210200 [exp]	11.95	0.8900

Compare expression of checked genes

Potri.017G049000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.