Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33565 166 / 9e-48 RING/U-box superfamily protein (.1) AT1G72220 153 / 3e-42 RING/U-box superfamily protein (.1) AT5G17600 142 / 6e-39 RING/U-box superfamily protein (.1) AT5G10380 135 / 6e-37 ATRING1, RING1 RING/U-box superfamily protein (.1) AT3G03550 127 / 4e-33 RING/U-box superfamily protein (.1) AT4G17905 101 / 4e-24 ATL4H RING/U-box superfamily protein (.1) AT2G20030 99 / 1e-22 RING/U-box superfamily protein (.1) AT1G72200 99 / 1e-22 RING/U-box superfamily protein (.1) AT1G22500 97 / 4e-22 AtATL15 Arabidopsis thaliana Arabidopsis toxicos en levadura 15, RING/U-box superfamily protein (.1) AT5G43420 92 / 1e-20 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G111900 [exp] 456 / 1e-160 AT4G33565 163 / 1e-46 RING/U-box superfamily protein (.1) Potri.002G101800 [exp] 202 / 2e-61 AT1G72220 195 / 3e-58 RING/U-box superfamily protein (.1) Potri.007G097500 [exp] 195 / 2e-58 AT5G10380 145 / 2e-40 RING/U-box superfamily protein (.1) Potri.005G071300 [exp] 189 / 8e-56 AT5G10380 135 / 1e-36 RING/U-box superfamily protein (.1) Potri.001G141200 [exp] 155 / 9e-44 AT5G17600 207 / 1e-63 RING/U-box superfamily protein (.1) Potri.003G093100 [exp] 151 / 5e-42 AT5G17600 196 / 1e-59 RING/U-box superfamily protein (.1) Potri.013G073500 [exp] 131 / 1e-34 AT3G03550 262 / 2e-85 RING/U-box superfamily protein (.1) Potri.019G043900 [exp] 123 / 2e-32 AT3G03550 223 / 3e-71 RING/U-box superfamily protein (.1) Potri.018G085001 [exp] 97 / 4e-22 AT4G28890 290 / 2e-94 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012745 [exp] 198 / 2e-60 AT4G33565 168 / 4e-49 RING/U-box superfamily protein (.1) Lus10015901 [exp] 158 / 6e-45 AT1G72220 175 / 3e-51 RING/U-box superfamily protein (.1) Lus10013618 [exp] 117 / 5e-30 AT5G17600 220 / 1e-69 RING/U-box superfamily protein (.1) Lus10037264 [exp] 116 / 4e-29 AT3G03550 144 / 3e-40 RING/U-box superfamily protein (.1) Lus10035677 [exp] 112 / 1e-27 AT3G03550 150 / 5e-42 RING/U-box superfamily protein (.1) Lus10004460 [exp] 100 / 6e-23 AT3G05200 307 / 6e-102 RING/U-box superfamily protein (.1) Lus10000333 [exp] 97 / 6e-22 AT3G05200 309 / 2e-102 RING/U-box superfamily protein (.1) Lus10012975 [exp] 95 / 3e-21 AT2G20030 291 / 2e-95 RING/U-box superfamily protein (.1) Lus10034953 [exp] 92 / 2e-20 AT2G20030 278 / 2e-90 RING/U-box superfamily protein (.1) Lus10023617 [exp] 92 / 2e-20 AT5G05810 219 / 1e-68 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.017G049300.1 pacid=42813191 polypeptide=Potri.017G049300.1.p locus=Potri.017G049300 ID=Potri.017G049300.1.v4.1 annot-version=v4.1 ATGGGTCCGCAGTACAGAAAGTTGTTGTTGTTCGACTCTAGTGATGGTTGTAAACAGATCTGTGAGGCAGCAGATGATCCGGGCGAATGCACTGATAATT GCCAGAAAATTGGAGAATGTTTAAGATCCTGTAAGGGAACAACTATGGACGATTGTGACTATTGCTTTGATTGCTTGGATGCACCCACCTGCTCACCACA CCACAAGCTTGGCAAGATTGCGTTAGCAATGATTGTGCTATCGGCTATAGCTTTTGTCCTTGCTTGTTGTGTTATCTATGTTAAGTTCATTAGAAAAAGA AGAAGGAGATCATCTTCACAGCAAGAAGATGATGAAGAAGAACAAAGGATTGAGACCCGTGATCAGCTTGTGGATCAAGATCAAGGTCCTGTAGTTGACC ATCCGATATGGTACATCAGGACAGTAGGGTTACAACCATCTGTTATTAGTTCTATCACAGTTTGCAAGTATAAAAGTGGTGATGGTCTTGTTGAAGGAAC TGAATGTTCTGTTTGCTTGAATGAGTTTCAAGATGATGAGACTCTTAGGTTGTTGCCGAAGTGCAGCCATGCTTTTCATATCCCATGTATTGATACCTGG CTTAGATCGCATACTAATTGCCCTTTGTGTCGTGCTCCTATAGTCACCAATACAGATGAAGCAACATCATCACAGGCTAATCTTGGTAATACAAGTAGTG GAGAAGAAACCCAGATTGAAGTTTTGGAAGATGATCAAGAATCCGATAGAGAAACGGAAGGTAGAGATGGTGAACTAAGGATTGTAACAGAGGAGGAAAG TCGATTCCAGAATGAGAATTTGAATGGAGAGGAGGATGGGATACAGCAACTGCGAAGATCGGTTTCTTTAGACTCTCTATCAGCTTTCAAGATAATTCAG GCTCTCGCTAATGTTCTTCCTGTAGTGGAATCTGATAGGAATTCAGGTGCCGGGAGGGCAGGAATAGGAAATGAATCCACTAGGGAAATTGTTCAAAACA GAGGTGTTGGAAATCAAAACTTGATGAAATCCATGGCTGCTACTTCTTTTGGGAGATCTTTCCGAATAGGGCCAAGTTCATTGAAGAGGTCACTTTCCTG TAGTGGGAAATTTTTCTTGTCAAGGGCTTGCCGGAACCGAAACTCAGGCCTTCCTTCTTGA
AA sequence Show only first row Show all	>Potri.017G049300.1 pacid=42813191 polypeptide=Potri.017G049300.1.p locus=Potri.017G049300 ID=Potri.017G049300.1.v4.1 annot-version=v4.1 MGPQYRKLLLFDSSDGCKQICEAADDPGECTDNCQKIGECLRSCKGTTMDDCDYCFDCLDAPTCSPHHKLGKIALAMIVLSAIAFVLACCVIYVKFIRKR RRRSSSQQEDDEEEQRIETRDQLVDQDQGPVVDHPIWYIRTVGLQPSVISSITVCKYKSGDGLVEGTECSVCLNEFQDDETLRLLPKCSHAFHIPCIDTW LRSHTNCPLCRAPIVTNTDEATSSQANLGNTSSGEETQIEVLEDDQESDRETEGRDGELRIVTEEESRFQNENLNGEEDGIQQLRRSVSLDSLSAFKIIQ ALANVLPVVESDRNSGAGRAGIGNESTREIVQNRGVGNQNLMKSMAATSFGRSFRIGPSSLKRSLSCSGKFFLSRACRNRNSGLPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33565			RING/U-box superfamily protein...		Potri.017G049300 [exp]	0	1
AT1G80900		MRS2-10, ATMGT1	magnesium transporter 1 (.1)		Potri.007G098200 [exp]	5.47	0.8538
AT5G10260		AtRABH1e	RAB GTPase homolog H1E (.1)		Potri.005G075300 [exp]	8.94	0.8438
AT3G25400			unknown protein		Potri.002G250000 [exp]	10.04	0.7566
					Potri.006G063600 [exp]	11.83	0.8343
AT2G19460			Protein of unknown function (D...		Potri.006G147700 [exp]	18.89	0.8500
AT3G01170			Ribosomal protein L34e superfa...		Potri.017G084500 [exp]	19.74	0.8112
AT5G39360		EDL2	EID1-like 2 (.1)		Potri.004G125000 [exp]	20.12	0.7953
AT2G28710	C2H2ZnF		C2H2-type zinc finger family p...		Potri.008G051200 [exp]	21.79	0.7962
AT1G67920			unknown protein		Potri.010G107200 [exp]	22.73	0.7777
AT3G09970			Calcineurin-like metallo-phosp...		Potri.002G156200 [exp]	25.07	0.8071

Compare expression of checked genes

Potri.017G049300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.