Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01020 1720 / 0 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (.1) AT5G10370 1716 / 0 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (.1) AT3G26560 397 / 5e-116 ATP-dependent RNA helicase, putative (.1) AT1G32490 349 / 1e-100 EMB2733, ESP3 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) AT2G35340 338 / 1e-96 MEE29 maternal effect embryo arrest 29, helicase domain-containing protein (.1) AT2G47250 320 / 3e-93 RNA helicase family protein (.1) AT3G62310 319 / 4e-93 RNA helicase family protein (.1) AT5G13010 329 / 1e-92 EMB3011 embryo defective 3011, RNA helicase family protein (.1) AT4G18465 298 / 2e-86 RNA helicase family protein (.1) AT1G27900 298 / 4e-86 RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G071500 [exp] 1912 / 0 AT5G10370 1979 / 0.0 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (.1) Potri.015G024400 [exp] 402 / 1e-117 AT3G26560 1768 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.012G034200 [exp] 399 / 1e-116 AT3G26560 1744 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.010G172500 [exp] 350 / 4e-99 AT5G13010 1715 / 0.0 embryo defective 3011, RNA helicase family protein (.1) Potri.015G008700 [exp] 332 / 2e-94 AT1G32490 1541 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Potri.008G096800 [exp] 308 / 4e-89 AT1G26370 1019 / 0.0 RNA helicase family protein (.1) Potri.014G117900 [exp] 308 / 4e-89 AT3G62310 1252 / 0.0 RNA helicase family protein (.1) Potri.002G192500 [exp] 307 / 4e-89 AT3G62310 1276 / 0.0 RNA helicase family protein (.1) Potri.010G057200 [exp] 303 / 6e-88 AT1G27900 1077 / 0.0 RNA helicase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023162 [exp] 1757 / 0 AT5G10370 1876 / 0.0 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (.1) Lus10036783 [exp] 402 / 2e-117 AT3G26560 1790 / 0.0 ATP-dependent RNA helicase, putative (.1) Lus10037145 [exp] 375 / 8e-109 AT3G26560 1529 / 0.0 ATP-dependent RNA helicase, putative (.1) Lus10031647 [exp] 336 / 2e-95 AT1G32490 1545 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Lus10015812 [exp] 305 / 2e-88 AT1G27900 1097 / 0.0 RNA helicase family protein (.1) Lus10036991 [exp] 304 / 4e-88 AT1G27900 1089 / 0.0 RNA helicase family protein (.1) Lus10005261 [exp] 301 / 1e-86 AT3G62310 1300 / 0.0 RNA helicase family protein (.1) Lus10033690 [exp] 304 / 6e-84 AT1G32490 1399 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Lus10037067 [exp] 288 / 2e-82 AT1G26370 927 / 0.0 RNA helicase family protein (.1) Lus10025127 [exp] 244 / 9e-68 AT4G18465 1033 / 0.0 RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0229 [poplar] [flax] RING PF01485 [poplar] [flax] IBR IBR domain, a half RING-finger domain CL0229 [poplar] [flax] PF04408 [poplar] [flax] HA2 Helicase associated domain (HA2) CL0021 [poplar] [flax] OB PF07717 [poplar] [flax] OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold
Representative CDS sequence Show only first row Show all	>Potri.017G050100.4 pacid=42813981 polypeptide=Potri.017G050100.4.p locus=Potri.017G050100 ID=Potri.017G050100.4.v4.1 annot-version=v4.1 ATGATCACCAGCAATAACCACCACCCCTCCACACGCCACCACCACCACTCCCAACACCGTCAGTCGCAGCATTTCAACCGTCACCGGAACTTCCGAAACC ACCAAAACCAAAGCCTTTTTGTAGTCAGGCTTTTGTCCAACCACCGTAATAATAACCGCACGCAATCCCCACTCGAAACCCTAATTTCCCAATGTAACCC TAAACCTGACAAATCCGATACAAACCCCACGTCCGCCGTTGCTGCTCGTTTGTTTTTCCACGACCAGAGCGATGCTATCGCCGCCGTCGTCTTCCTCTGG GAACGGAGGCTGGCTGGGGATCATGTGTATACTCCGGTGACGGATTTTGATGTAAATGAAGGGGACTTGAATGAGAGGATTAGAGGTTTGTTTAAATTGT ATGCAGAGAGGGTGTTAGAAGGGGAGGTAGTGAAGAAATTGGAGAGAAAGATTGAAAATTTGGCCGTGGAAATTGGTAAATTTACGAGCTTTTTCAAGCG GCCGAAAGGGGTTAGGGTTTATAGTGAGAATAAGGTGAAGAAGGAGGCGTTGAGGGTGGAAATGGAGGTGGTTGTGAAGAGGGTGGAGGAGTTTAGGAAG GGAATGAGGTGTTTGATGGATTGCATTGAAGGGAAGGAGATTGGTGATTTGGGGGTTTTGAGGGTTTATGATGAGGGTAATGGGAGAAAGATGGGAATTT TTTATTATTGGAGCAGGATTCATTTTCTGATATTGAGAGAGTGTAGAAGGGTAGAAAATGGGTTGCCTGTTTATGGGTTTAGGAGTGAGTTTTTGAAGAT GCTGCGTTCACAGCAGGTGATGGTCTTGATTGGAGAAACAGGTTCAGGGAAGAGTACGCAGTTGGCACAATTTATTGCTGATTCAGGAGTTGCATCAAGT GGTTCAATTTTGTGCACTCAACCCCGCAAAATTGCTGCTATATCCCTGGGAAAAAGGGTCGGTGAAGAATGCAATGGATGTTATGAAGATAATTCAATTA TCTGCTACCCATCTTATTCATCTTCCCAGCAGTTTGGTTCGAAGGTAATATATATGACTGATCACTGTCTACTGCAAAACCTCATGAAAGATAAAAATTT GTTTGGAGTTTCGTGCATTATTGTAGATGAGGCTCATGAAAGAAGCTTGAATACTGATCTTCTTTTGGGCTTGCTAAAAGAATTACTTCAGGAAAGGCCT GACTTACAGCTAATTATAATGTCTGCAACAGTTGATGCAAGCAAATTATCCAGTTATTTCTTTGGCTGTGGAACATTTCATGTGTTGGGGAGAAGCTTTC CTGTTGAAATCAAATATGCTCCTGCTGCATCTAGAGAGTCCCTTGACCCCTTGCCGAGCTCCAATAATGCAGCTCCATATGTTTGTGATGTTGTTAAGAT GGCAACGGAAATTCATGCAGCAGAGGAGGATGGGGCAATACTTGCTTTTTTGACTTCACAGGCAGAAGTAGAATGGGCATGTGAAAAGTTTCAGTCTCCC TCTGCAATTGCGCTCCCATTACATGGGAAGCTTTTCCATGAAGAGCAATGTCGTGTTTTTCAGAATTACCCAGGAAAGAGAAAAGTTGTTTTTGCTACAA ATTTAGCGGAAACATCCATAACAATTCCAGGGGTCAAGTACGTGGTTGATTCTGGTTTAGTTAAAGATAGCAGGTTTGAATCTTCATCTGGTATGAATGT GCTCAGAGTTTCCAAGATCAGCCAAAGTTCTGCAAATCAACGAGCTGGCCGTGCTGGTAGAACAGATCCTGGCAAGTGTTACCGGTTGTACTCGGTTTCT GATTATCAGTCAATGGATTTGCATCAGGAACCTGAAATTTGTAAAGTTCATCTTGGCATTGCAGTTTTGAGGATTCTTGCCTCTGGTATTAAGAATGTGC TAGAGTTTGATTTTATTGATGCTCCAAGTGTGGATGCAATCAACAAGGCAATCAGGAACCTTGTTCAGTTAGGTGCTGTTGCCTGGAAACATGATGCTTT TGTATTAACTGCTGATGGACACTACTTAGTTAAATTGGGTATGGAGCCTCGACTTGGGAAAATTATTCTTGAAAGTCTCCGTTATGGTTTGCGCAAGGAG GGAGTTGTCCTTGCTGCAGCTATGGCAAATGCCAGTAACATTTTTTGCAGAGTGGGTACTTATGATGAGAAACTGAAGTCTGATTGCCTTAAGGTCCGGT TCTGCCATCACGATGGAGATCTCTTCACTTTGCTCTCCGTCTACAGGGAATGGGAGAGTTTACGGCAAGAGAATAGAAATAAATGGTGTTGGGAAAATAG AATCAATGCAAAAACTATGCGAAGATGCAGAGATACAGTATTGGAGTTGGAAAACTGTTTGAAAAATGAACTCAATATCATTATTCCAACTTACTGGCTT TGGGATCCTCTTGTTGCCTCTGTGCATGATGAAAACATGAAGAAGATTATACTTTCTTCACTAGCAGATAATGTAGCTATGTATTCTGGATATGATCGCC TTGGTTATGAGGTTGTTTTAAGTGGTGAATACTTCCAACTTCACCCTTCATGTTCATTACAAGTGTATAACCAGAAGCCACATTGGGTTGTCTTTGCTGA ACTCTTGTCCATATCAAGTCAATATTTGGTTTGTGTTACAGCAATTGACTTTGACAGTTTATCTACCTTCATACATCCTTTATTTGATGTCTCAAAGATG GAATCTAGAAAACTGCAGTTGAGGGTGATAAAAGGATTTGGAGGTGTTGCTTTGAAACGGTTTTGTGGAAAGTCAAATAGTAGCTTGATAGCACTTGTTT CTCGCATGCGTGCTATTTACATGGATGAACGCATTGGAATTGAAATCAATGTGGGTGACAACGAGATTCAATTGTTTGCATCGTCCAAAGATATTGAAAA GATTTATGAATATGTCAATAATGCGTTAAGATATGAAACAAAGTGGTTAAGGAATGAATGCTTGGAGAAGTGCTTATATCATGAGGTACGGGCTGGTGCT TCCCCCCCTGTTGCACTTGTTGGAGCTGGTGCTGAAATTAAGCATCTGGAGTTGGGAAATAGATGTTTAACAGTGGATGTGCACCTTTCCAATGTGAATG TGGTAGATGACAAGGAAGTTTTGACATTCTTAGAGAAATCTGTATCTGGAATTTGTGGTTATAACAAATTCACGGGCATTGGACAGCATGGTGGTGATGC AGAAAGGTGGGGCAGGGTGTCATTCCTTACTCCTGAAGCAGCTAGAAAAGCTCTATATTTTAATGGATCCGAGTTATGTGGATGTGTACTTAAGTTGTCC CTGTCTCGGTCATCTGTTGGAGGTATTCGAAAGTCATCATTTGCTGCCGTAAAAGCAAAAATCAGTTGGCCACGCCGGTATAGCAAAGGGTATGCAATTG TCAGATGTGAAAGGAATGATGCCCAGTTCATTGTTGATGATTGCTTTAATGTTCTGATTGGAGGCAGGTTTGTTCAGTGTCAGACCAGCACAAGAGACAT GAACTCTGTAGTTATCAGAGGACTGGATAAAGAAACTTCTGAAGCAGAAATTTTAGAAGTTCTGCACAAGACAACAAATAGGAGAATTTTGGATGTATTC CTAATCAGAGGAGATGAAGCAAATAATCATTCTGTTGATGCTTTTGAGCAAGCAATTCTCAAGGAAATTGCTCCTTTCATGCCTAGCCAGGGCCCTTTGA GCAATTACTGCCATGTTCAGGTCTTTGCCCCTGAGCCAAAGGATAGTTTCATGAAGGCTTGGATCACTTTTGATGGAAAATTACATTTGGAGGCAGCTAA AGCTCTGCAACATATGCAAGGAAAAGCACTTGCTGGTTGTTTTTCATGGCAGAAGATGCAATGCCAGCAGGTGTTCCATAGCTCTGCATCATGTTCTGCT TCTGTTTATGCATTCATTGAGAGGCAGCTGAATATTTTACTGAAAAGCTTCAAGTTTCGACCTGGTGTGTGTTGCAATTTAGAAAGGAATGAGAATGGCT CTTATAGAGTGAAGATATCTGCTAATGCAACAAAGACAGTAGCTGAGTTGAGAAGGCCGCTGGAGCAACTGATGAATGGAAAGAAGGTAAATCATTGTAG CCTCACCCCATTGGTTCTGCAGCTTCTCTTTTCCAAAGATGGCATCATGCTTATGAAGTCACTGCAGCAAGAGATGGGAACATATATTCTCTTTGATAGG CAGAACCTCACTGTTAGGATCTTTGGCCCCGAGAAGAAAGTTGCTCTTACTGAACAGAAGTTGATAGCATCTCTTCTAGCCCTCCATGATAAGGAACAAA CAGATATCCGCCTTCGAGGTGGAGCAATGCCGTATGATCTTATGAAAAAGGTGGTGGAGAAGTTTGGTCCTGACTTGCATGTGCTCAAAGAGACGTTCCC TGAGGCTGAATTTATGCTTAATACAAGGCGACATGTTATTTCTTTTTCTGGAAAAAAGGATCTGAGACTCCAAGTGGAGCAGATGATTCGTGACTTTGTG CGGTCTGTCGGTGTTAATGGATCCATCAAACGATATGAAGATGACAATATTGCCTGCCCTATTTGCCTTTGTGAGGTTGAGGACTGTTACCAGCTTGAGG CTTGTGGGCATAAATTCTGCCAGTCATGCTTGGTTGAACAGTTAGAGTCAGCAATGAGAGGACGTGATGGCTTCCCTGTAGGTTGTGCTCATGAAGGTTG TGGCATGCACATTTGGCTTACAGATCTGAAGTCTCTTTTACCATGTGAGAAGTTAGAGGATCTCTTCAGGGCCTCCTTGTCAGCCTTTGTGGCATCTAGT GGTGGAACTTACAGATTTTGCCCATCTCCTGATTGCCCTTCAGTATATCACGTAGCAAGTGGGATGGTTGGTGATCTATTTGTTTGTGGAGCATGCTATG CCGAGACATGTACAAGGTGCCATGTGGAGTATCATCCATTCGTATCATGTGAAAAATACAAGGAGCTCAAGGAGGATCCTGACATGTCCTTGAAGGAATG GTGCAAGGGAAAAGAGCATGTTAGAAACTGCCCAGTATGTGGATACACAATTGAGAAGGTAGATGGCTGCAACCACATTGAGTGCAGATGTGGGAAACAC ATCTGCTGGGTCTGCTTGGAGGTCTTTATGAGCGGTGATGACTGCTATGCGCACTTGAGGTCTGTACATCCTGCTACATTATAA
AA sequence Show only first row Show all	>Potri.017G050100.4 pacid=42813981 polypeptide=Potri.017G050100.4.p locus=Potri.017G050100 ID=Potri.017G050100.4.v4.1 annot-version=v4.1 MITSNNHHPSTRHHHHSQHRQSQHFNRHRNFRNHQNQSLFVVRLLSNHRNNNRTQSPLETLISQCNPKPDKSDTNPTSAVAARLFFHDQSDAIAAVVFLW ERRLAGDHVYTPVTDFDVNEGDLNERIRGLFKLYAERVLEGEVVKKLERKIENLAVEIGKFTSFFKRPKGVRVYSENKVKKEALRVEMEVVVKRVEEFRK GMRCLMDCIEGKEIGDLGVLRVYDEGNGRKMGIFYYWSRIHFLILRECRRVENGLPVYGFRSEFLKMLRSQQVMVLIGETGSGKSTQLAQFIADSGVASS GSILCTQPRKIAAISLGKRVGEECNGCYEDNSIICYPSYSSSQQFGSKVIYMTDHCLLQNLMKDKNLFGVSCIIVDEAHERSLNTDLLLGLLKELLQERP DLQLIIMSATVDASKLSSYFFGCGTFHVLGRSFPVEIKYAPAASRESLDPLPSSNNAAPYVCDVVKMATEIHAAEEDGAILAFLTSQAEVEWACEKFQSP SAIALPLHGKLFHEEQCRVFQNYPGKRKVVFATNLAETSITIPGVKYVVDSGLVKDSRFESSSGMNVLRVSKISQSSANQRAGRAGRTDPGKCYRLYSVS DYQSMDLHQEPEICKVHLGIAVLRILASGIKNVLEFDFIDAPSVDAINKAIRNLVQLGAVAWKHDAFVLTADGHYLVKLGMEPRLGKIILESLRYGLRKE GVVLAAAMANASNIFCRVGTYDEKLKSDCLKVRFCHHDGDLFTLLSVYREWESLRQENRNKWCWENRINAKTMRRCRDTVLELENCLKNELNIIIPTYWL WDPLVASVHDENMKKIILSSLADNVAMYSGYDRLGYEVVLSGEYFQLHPSCSLQVYNQKPHWVVFAELLSISSQYLVCVTAIDFDSLSTFIHPLFDVSKM ESRKLQLRVIKGFGGVALKRFCGKSNSSLIALVSRMRAIYMDERIGIEINVGDNEIQLFASSKDIEKIYEYVNNALRYETKWLRNECLEKCLYHEVRAGA SPPVALVGAGAEIKHLELGNRCLTVDVHLSNVNVVDDKEVLTFLEKSVSGICGYNKFTGIGQHGGDAERWGRVSFLTPEAARKALYFNGSELCGCVLKLS LSRSSVGGIRKSSFAAVKAKISWPRRYSKGYAIVRCERNDAQFIVDDCFNVLIGGRFVQCQTSTRDMNSVVIRGLDKETSEAEILEVLHKTTNRRILDVF LIRGDEANNHSVDAFEQAILKEIAPFMPSQGPLSNYCHVQVFAPEPKDSFMKAWITFDGKLHLEAAKALQHMQGKALAGCFSWQKMQCQQVFHSSASCSA SVYAFIERQLNILLKSFKFRPGVCCNLERNENGSYRVKISANATKTVAELRRPLEQLMNGKKVNHCSLTPLVLQLLFSKDGIMLMKSLQQEMGTYILFDR QNLTVRIFGPEKKVALTEQKLIASLLALHDKEQTDIRLRGGAMPYDLMKKVVEKFGPDLHVLKETFPEAEFMLNTRRHVISFSGKKDLRLQVEQMIRDFV RSVGVNGSIKRYEDDNIACPICLCEVEDCYQLEACGHKFCQSCLVEQLESAMRGRDGFPVGCAHEGCGMHIWLTDLKSLLPCEKLEDLFRASLSAFVASS GGTYRFCPSPDCPSVYHVASGMVGDLFVCGACYAETCTRCHVEYHPFVSCEKYKELKEDPDMSLKEWCKGKEHVRNCPVCGYTIEKVDGCNHIECRCGKH ICWVCLEVFMSGDDCYAHLRSVHPATL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G01020			helicase domain-containing pro...		Potri.017G050100 [exp]	0	1
AT1G03610			Protein of unknown function (D...		Potri.017G152601 [exp]	1.73	0.9005
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Potri.012G088900 [exp]	1.73	0.8325
AT2G19390			unknown protein		Potri.006G146600 [exp]	8.48	0.8470
AT3G15355		UBC25 ,PFU1	PHO2 FAMILY UBIQUITIN CONJUGAT...		Potri.001G400300 [exp]	8.66	0.8170
AT4G27190			NB-ARC domain-containing disea...		Potri.001G426200 [exp]	9.16	0.8322
AT1G55040			zinc finger (Ran-binding) fami...		Potri.005G033000 [exp]	11.95	0.7915
AT2G27350		OTLD1	otubain-like deubiquitinase 1,...		Potri.004G196800 [exp]	12.68	0.8088
AT1G09770	MYB	ATCDC5, AtMYBCD...	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.013G046300 [exp]	15.96	0.7879
AT3G59670			unknown protein		Potri.005G144800 [exp]	16.24	0.8005
AT3G17920			Outer arm dynein light chain 1...		Potri.012G045300 [exp]	16.49	0.8067

Compare expression of checked genes

Potri.017G050100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.