Plant FIBer expression Database

Potri.017G050400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G64300 713 / 0 ATGCH, ATRIBA1, RFD1 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1)
AT2G22450 582 / 0 riboflavin biosynthesis protein, putative (.1)
AT5G59750 547 / 0 DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G310500
[exp]
922 / 0 AT5G64300 764 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1)
Potri.007G097300
[exp]
719 / 0 AT5G64300 773 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1)
Potri.005G071600
[exp]
618 / 0 AT5G64300 647 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1)
Potri.001G234900
[exp]
545 / 0 AT5G59750 770 / 0.0 DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035929
[exp]
701 / 0 AT5G64300 763 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1)
Lus10012751
[exp]
699 / 0 AT5G64300 755 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1)
Lus10025733
[exp]
696 / 0 AT5G64300 757 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1)
Lus10023161
[exp]
687 / 0 AT5G64300 744 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1)
Lus10040865
[exp]
520 / 4e-179 AT5G59750 714 / 0.0 DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II (.1.2)
Lus10006669
[exp]
474 / 4e-164 AT5G64300 513 / 5e-179 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1)
Lus10007013
[exp]
468 / 1e-159 AT5G64300 506 / 4e-174 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1)
Lus10005882
[exp]
403 / 4e-136 AT5G59750 502 / 2e-175 DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00925 GTP_cyclohydro2 GTP cyclohydrolase II
PF00926 DHBP_synthase 3,4-dihydroxy-2-butanone 4-phosphate synthase
Representative CDS sequence
>Potri.017G050400.2 pacid=42814454 polypeptide=Potri.017G050400.2.p locus=Potri.017G050400 ID=Potri.017G050400.2.v4.1 annot-version=v4.1
ATGGCTTCTTTCAATGTTTCTTCTTGCCCTTCAACAACCACAAGAGCAGCTCGCTCTGGTTCCCAGGCATGCAGGAACTTCAGATTGTTCAATGGATTAC
ATGGTGTGAATTCATTTTCTGCAAATGGGAATGCATTGAATTTGGCATTGATCCGGCTGGATGGAAGTAAATCATCTTTTGGTATTAAGGGTGTTAGCAA
AACTCGAGCCACGCTGATATCTGGTGATGAGCTACTGTCCTATTCCAATGACAATGGTGTTGTTGCAAAGAGTGCTCTTCTTGATAATGGTTCTGTTGGG
GTTGACTTACAGCCTGAGGCAGTAGCATTTGGAGCCCTATCAGCGGATAATGCTTTCATCACTAATGATTTTTCCATTGGTAATGATGACCGTCAATTGG
ATTGCCCCTCAGAAGGGTTTTCTTCCATCCCTGACGCTATTGAAGATATTCGCCGAGGAAAGATTGTAGTGGTTGTAGATGATGAAGACAGAGAAAATGA
AGGGGATCTCATTATGGCAGCAGAGTTGGCAACACCTGAAGCTATGGCGTTTATTGTAAAGCATGGCACTGGAATAGTTTGTGCGAGCATGAAAGGTGAA
GATCTGGACAGGTTACAGCTTCCTTTGATGGTTAGGCAAAATGAAAATGATGAAAAACTTCGTACAGCTTTCACTGTGACTGTGGATGCTAAACATGGTA
CAACAACTGGGGTTTCGGCTAATGATAGGGCAACAACAGTGTTAGCTCTTGCATCCAAAGATTCAAAGCCTGACGATTTCAACCGCCCAGGCCACATTTT
TCCATTGAGGTATAGGGAGGGTGGTGTTCTGAAAAGAGCTGGACACACAGAAGCTTCTGTTGATCTTGCCGTTCTAGCTGGATTGGATCCTGTTGCAGTT
CTGTGTGAGGTTGTAGACGATGATGGCTCCATGGCTAGATTACCGAAGCTTCTTCAATTTGCAGAGAGGGAGAACTTGAAAATTATATCTATAGCTGATT
TAATCAGGTATAGAAGGAAGACAGATAAGTTGGTAGAATATGCTTCTGCTGCTCGGATACCTACAATGTGGGGACCGTTCACAGCTCATTGTTACAAGTC
AATCTTGGATGGCATTGAGCATGTTGCAATGGTTAAGGGTGACATTGGAGATGGGGAGGATATTCTTGTGAGGGTACATTCAGAATGCCTCACAGGAGAT
ATATTTGGATCTGCTAGATGTGAATGTGGGAATCAGCTGGCACTTGCAATGCAGCAGATTGAAGCTGCTGGCAGAGGTGTTTTGGTCTATCTCCGCGGGC
ACGAAGGGCGTGGCATTGGTTTGGGTCATAAACTCCGTGCATACAACCTACAAGATGATGGACGTGATACCGTGGAGGCAAATGAGGAGTTGGGGCTGCC
TGTTGATTCACGAGAATATGGCATTGGCGCCCAGATGTTACGAGATCTGGGTGTCCGAACAATGAAGTTGATGACAAACAACCCTGCAAAGTACATCGGG
CTCAAGGGTTATGGATTGGCAGTTGCAGGAAGAGTTCCGCTATTAACTCCCATCACAAAGGACAGCAAGAGACAGCAATGGTAG
AA sequence
>Potri.017G050400.2 pacid=42814454 polypeptide=Potri.017G050400.2.p locus=Potri.017G050400 ID=Potri.017G050400.2.v4.1 annot-version=v4.1
MASFNVSSCPSTTTRAARSGSQACRNFRLFNGLHGVNSFSANGNALNLALIRLDGSKSSFGIKGVSKTRATLISGDELLSYSNDNGVVAKSALLDNGSVG
VDLQPEAVAFGALSADNAFITNDFSIGNDDRQLDCPSEGFSSIPDAIEDIRRGKIVVVVDDEDRENEGDLIMAAELATPEAMAFIVKHGTGIVCASMKGE
DLDRLQLPLMVRQNENDEKLRTAFTVTVDAKHGTTTGVSANDRATTVLALASKDSKPDDFNRPGHIFPLRYREGGVLKRAGHTEASVDLAVLAGLDPVAV
LCEVVDDDGSMARLPKLLQFAERENLKIISIADLIRYRRKTDKLVEYASAARIPTMWGPFTAHCYKSILDGIEHVAMVKGDIGDGEDILVRVHSECLTGD
IFGSARCECGNQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPAKYIG
LKGYGLAVAGRVPLLTPITKDSKRQQW

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G64300 ATGCH, ATRIBA1,... RED FLUORESCENT IN DARKNESS 1,... Potri.017G050400
[exp]
0 1
AT2G26560 PLP2, PLAIIA, P... PATATIN-LIKE PROTEIN 2, phosph... Potri.017G133951
[exp]
2.44 0.9849
AT1G78780 pathogenesis-related family pr... Potri.005G188400
[exp]
3.00 0.9793 Pt-PR.3
Potri.010G218400
[exp]
4.58 0.9855
AT2G26560 PLP2, PLAIIA, P... PATATIN-LIKE PROTEIN 2, phosph... Potri.017G134001
[exp]
5.29 0.9742
AT2G26560 PLP2, PLAIIA, P... PATATIN-LIKE PROTEIN 2, phosph... Potri.017G134051
[exp]
9.38 0.9718
AT4G37370 CYP81D8 "cytochrome P450, family 81, s... Potri.002G121300
[exp]
12.96 0.9659
AT2G26560 PLP2, PLAIIA, P... PATATIN-LIKE PROTEIN 2, phosph... Potri.017G133850
[exp]
13.56 0.9660
Potri.001G268500
[exp]
14.31 0.9353
AT3G09020 alpha 1,4-glycosyltransferase ... Potri.016G114200
[exp]
15.19 0.9668
AT1G24020 MLP423 MLP-like protein 423 (.1.2) Potri.008G213100
[exp]
22.44 0.9716

Potri.017G050400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.