Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02220 407 / 2e-129 ATPSKR1 phytosulfokin receptor 1 (.1) AT5G53890 330 / 2e-100 AtPSKR2 phytosylfokine-alpha receptor 2 (.1) AT1G17240 273 / 1e-81 AtRLP2 receptor like protein 2 (.1) AT1G17250 264 / 6e-78 AtRLP3 receptor like protein 3 (.1) AT1G72300 254 / 1e-72 Leucine-rich receptor-like protein kinase family protein (.1) AT1G08590 199 / 1e-53 Leucine-rich receptor-like protein kinase family protein (.1) AT2G25790 197 / 5e-53 Leucine-rich receptor-like protein kinase family protein (.1) AT5G01890 195 / 3e-52 Leucine-rich receptor-like protein kinase family protein (.1) AT4G28650 192 / 2e-51 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G07280 192 / 3e-51 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G050700 [exp] 610 / 0 AT2G02220 540 / 1e-180 phytosulfokin receptor 1 (.1) Potri.001G310700 [exp] 577 / 0 AT2G02220 505 / 5e-167 phytosulfokin receptor 1 (.1) Potri.010G097700 [exp] 434 / 2e-139 AT2G02220 1187 / 0.0 phytosulfokin receptor 1 (.1) Potri.008G144700 [exp] 427 / 5e-137 AT2G02220 1258 / 0.0 phytosulfokin receptor 1 (.1) Potri.011G116900 [exp] 344 / 2e-105 AT5G53890 1279 / 0.0 phytosylfokine-alpha receptor 2 (.1) Potri.001G398500 [exp] 326 / 1e-98 AT5G53890 1268 / 0.0 phytosylfokine-alpha receptor 2 (.1) Potri.003G074000 [exp] 270 / 6e-78 AT1G72300 1215 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G161000 [exp] 244 / 4e-69 AT1G72300 1199 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.019G021700 [exp] 198 / 2e-53 AT1G08590 1286 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005403 [exp] 330 / 7e-100 AT5G53890 1248 / 0.0 phytosylfokine-alpha receptor 2 (.1) Lus10009213 [exp] 324 / 8e-98 AT5G53890 1258 / 0.0 phytosylfokine-alpha receptor 2 (.1) Lus10016395 [exp] 257 / 3e-73 AT1G72300 1170 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10019722 [exp] 249 / 1e-70 AT1G72300 1189 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10009394 [exp] 203 / 6e-55 AT3G47570 642 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10014174 [exp] 201 / 3e-54 AT5G01890 1032 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10037955 [exp] 193 / 7e-53 AT3G47570 462 / 6e-151 Leucine-rich repeat protein kinase family protein (.1) Lus10030526 [exp] 195 / 3e-52 AT3G56370 1170 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10006045 [exp] 195 / 4e-52 AT2G25790 858 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10022738 [exp] 194 / 4e-52 AT5G01890 1035 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.017G050600.3 pacid=42812949 polypeptide=Potri.017G050600.3.p locus=Potri.017G050600 ID=Potri.017G050600.3.v4.1 annot-version=v4.1 ATGAAGATGCAGCTCCCATACCTTTACTTTACCTTCATTTTGTGCACGATCAGTTTCAAGGCACCTGTCATGAGATGCCAGAATGTGACATGCAACTCAA CTGACCTCAGAGCCTTAATTAACTTCTCCAGTTGCATAGACTCAGGGATTGATGGGTGGGATATCTCTAGTTCTGGTTGTTGCTCTTGGAATGGTGTCAC TTGTGACAACTCCACCACTTCAAGTAAAAGGGTGGTCAAGTTAGAACTTGCAAGAAAAGGACTCGGAGGTTCAATCTGCAAGTCCTTCGAAGGTTTAGAT GAGCTGAGGATTCTGAACCTTTCTGCTAATTTTCTTACAGGATACTTGAACCCCTACCACTTCAGTTTGCAAAAGCTGGAGGTCATTGATATGAGCAATA ATGACTTTTACGGTCAATTACTACATGGTGATGATTTACCCTCACTCTGGTATGTTGACCTCTCGATGAACAGATTTAGTGGCAGTATAGATGCAACATA TTGTTCAATGTCACCCCTTATTGAAGTTCTTAATCTTGCAAACAACTATTTGATTGGTGAAGTTTCAGAGAGTTTTGTAAAATGTTCTTCTCTGCAGCAT CTCTTTCTTAATGGCAATCAGATCTCAGGAACTTTTCCGAAAAGTCTCTTGCAACTGAGAGATCTTCGTACGTTGAAACTTCAAGAAAATTTGTTTACTG GATCGCTAAATGATGGAATTGGTAACCTGTCTAAGCTTGTGAAATTGGACCTCTCCTTCAACAGGTTTAATGGATTTCTTCCAGATGTGTTTGACCAGCT TGAAACGCTCGAGCACTTCTCTGCCAGATCAAATAAATTCAGTGGCCAGTTGCCCAAGTCATTGGTAAATTCTCAATCCCTTTTGACTCTTGATTTGGAA AACAACTCCTTCACCGGTCTAATCGATCTCAATTGTTCTGCAATGATTCAACTTACCACCCTAAATCTTGCTTCCAATAATTTCCATGATCTGGTAGCTA ATAGTTTATCATCTTGCCTAGGACTAAATAGTTTGAATCTTTCCCACAACCACCTTAGAGGTGGACTACAGTTTGCCTTCAAGAATCTCCAGTCCATGAG ACGCCTGTCACTCTCAAACACCGGTCTTGTTAACTTTACATCAGCACTTGCAACTCTGCAATATTGCGAAAACCTAACCATGCTGGACCTTAGCTTAAAC TTTCAAAATGAGGAATTACCAACTGATATGAGTTTGCAGTTCAGAAACCTCAAGGAACTCTTTGTCTCCAATTGTCAACTAAGAGGTTCAATTCCATCAT GGTTGAGTTCTTTCAGCAATTTGCAGGTGTTGGATCTTTCACAGAATCATTTGGGAGGATCCATCCCATACTGGATAGGAACATTCAAATATCTCTTGTA CTTGAACTTGTCAAGTAACTCCTTGACCGGGGAGATTCCAGAAGGCTTGACTGAACTACCGAGCCTCATTGACATGAACATCTCATTGGAAAGGTTTGCG ACCAAAATTTGGAGCTCCATTCCATCTTTGGACTTGAGCTACAACATGCTCACAGGACACATACCTCCAAGTACTGGGAAGCTGAGAAAACTTCATATAC TAAATCTGAAGTACAATAGTTTATCAGGACCTATTCCTGGTAGTTTATCAAGGATGACAAGCTTAGAAACCTTAGACTTATCTCATAACAAGCTATCAGG AGAAATTCCTGATACATTGAGAGAGCTCAGTTGTCTATCAACTTTCAATGTATCATACAATCAACTGCATGGGGAAGTCCCTGAAACAGGGCAGTTAGCG ACCTTTCTTTGTACAAGCTTCATTGGAAATCCCGGTCTAACCTGTGGATGGGATGCCTATAGTCCACCTGCACAAACTCCTCCCCCTCCTACTCCTGTTG TGTTTCCCAGTGACAAAATGACAATCATGGGCTGGCCATTTGTATTTGGCGTTCCAACCGGTTTTGTCATCACCGTGGGCTTTTGCTTTGTAACTGGCTG GATTTTTCCAAAGCCAGAAAAAAGGAAGGTTAGAGTAATTAGAATCGGCCGCTAG
AA sequence Show only first row Show all	>Potri.017G050600.3 pacid=42812949 polypeptide=Potri.017G050600.3.p locus=Potri.017G050600 ID=Potri.017G050600.3.v4.1 annot-version=v4.1 MKMQLPYLYFTFILCTISFKAPVMRCQNVTCNSTDLRALINFSSCIDSGIDGWDISSSGCCSWNGVTCDNSTTSSKRVVKLELARKGLGGSICKSFEGLD ELRILNLSANFLTGYLNPYHFSLQKLEVIDMSNNDFYGQLLHGDDLPSLWYVDLSMNRFSGSIDATYCSMSPLIEVLNLANNYLIGEVSESFVKCSSLQH LFLNGNQISGTFPKSLLQLRDLRTLKLQENLFTGSLNDGIGNLSKLVKLDLSFNRFNGFLPDVFDQLETLEHFSARSNKFSGQLPKSLVNSQSLLTLDLE NNSFTGLIDLNCSAMIQLTTLNLASNNFHDLVANSLSSCLGLNSLNLSHNHLRGGLQFAFKNLQSMRRLSLSNTGLVNFTSALATLQYCENLTMLDLSLN FQNEELPTDMSLQFRNLKELFVSNCQLRGSIPSWLSSFSNLQVLDLSQNHLGGSIPYWIGTFKYLLYLNLSSNSLTGEIPEGLTELPSLIDMNISLERFA TKIWSSIPSLDLSYNMLTGHIPPSTGKLRKLHILNLKYNSLSGPIPGSLSRMTSLETLDLSHNKLSGEIPDTLRELSCLSTFNVSYNQLHGEVPETGQLA TFLCTSFIGNPGLTCGWDAYSPPAQTPPPPTPVVFPSDKMTIMGWPFVFGVPTGFVITVGFCFVTGWIFPKPEKRKVRVIRIGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G02220		ATPSKR1	phytosulfokin receptor 1 (.1)		Potri.017G050600 [exp]	0	1
AT5G27060		AtRLP53	receptor like protein 53 (.1)		Potri.001G389100 [exp]	6.70	0.8656	PSCLRR52.53
AT3G02720			Class I glutamine amidotransfe...		Potri.004G076000 [exp]	10.53	0.8651
					Potri.016G047700 [exp]	11.22	0.8654
AT5G24430			Calcium-dependent protein kina...		Potri.012G023300 [exp]	13.19	0.8553	CRK4
AT3G11680			Aluminium activated malate tra...		Potri.016G070000 [exp]	15.23	0.8631
AT3G02720			Class I glutamine amidotransfe...		Potri.004G075900 [exp]	16.30	0.8520
AT2G38870			Serine protease inhibitor, pot...		Potri.006G212200 [exp]	17.02	0.8597
					Potri.017G047400 [exp]	24.24	0.8447
AT2G38870			Serine protease inhibitor, pot...		Potri.010G075400 [exp]	25.09	0.8456	BGIT.1
AT5G43580		UPI	UNUSUAL SERINE PROTEASE INHIBI...		Potri.010G075300 [exp]	25.25	0.8453

Compare expression of checked genes

Potri.017G050600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.