Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02220 539 / 3e-180 ATPSKR1 phytosulfokin receptor 1 (.1) AT5G53890 426 / 1e-136 AtPSKR2 phytosylfokine-alpha receptor 2 (.1) AT1G17250 315 / 4e-97 AtRLP3 receptor like protein 3 (.1) AT1G72300 317 / 5e-95 Leucine-rich receptor-like protein kinase family protein (.1) AT1G17240 305 / 1e-93 AtRLP2 receptor like protein 2 (.1) AT2G25790 218 / 4e-60 Leucine-rich receptor-like protein kinase family protein (.1) AT3G28890 205 / 7e-57 AtRLP43 receptor like protein 43 (.1.2) AT1G08590 206 / 4e-56 Leucine-rich receptor-like protein kinase family protein (.1) AT3G28040 206 / 5e-56 Leucine-rich receptor-like protein kinase family protein (.1) AT5G01890 202 / 8e-55 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G310700 [exp] 832 / 0 AT2G02220 505 / 5e-167 phytosulfokin receptor 1 (.1) Potri.017G050600 [exp] 653 / 0 AT2G02220 407 / 2e-129 phytosulfokin receptor 1 (.1) Potri.010G097700 [exp] 536 / 5e-179 AT2G02220 1187 / 0.0 phytosulfokin receptor 1 (.1) Potri.008G144700 [exp] 528 / 1e-175 AT2G02220 1258 / 0.0 phytosulfokin receptor 1 (.1) Potri.011G116900 [exp] 419 / 1e-133 AT5G53890 1279 / 0.0 phytosylfokine-alpha receptor 2 (.1) Potri.001G398500 [exp] 414 / 1e-131 AT5G53890 1268 / 0.0 phytosylfokine-alpha receptor 2 (.1) Potri.003G074000 [exp] 328 / 2e-99 AT1G72300 1215 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G161000 [exp] 321 / 1e-96 AT1G72300 1199 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.018G045500 [exp] 222 / 8e-62 AT2G25790 925 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005403 [exp] 404 / 5e-128 AT5G53890 1248 / 0.0 phytosylfokine-alpha receptor 2 (.1) Lus10009213 [exp] 403 / 9e-128 AT5G53890 1258 / 0.0 phytosylfokine-alpha receptor 2 (.1) Lus10016395 [exp] 335 / 1e-101 AT1G72300 1170 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10019722 [exp] 324 / 7e-98 AT1G72300 1189 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10035429 [exp] 208 / 1e-56 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10006045 [exp] 206 / 5e-56 AT2G25790 858 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10039030 [exp] 206 / 5e-56 AT1G73080 1095 / 0.0 PEP1 receptor 1 (.1) Lus10022738 [exp] 202 / 9e-55 AT5G01890 1035 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10014174 [exp] 201 / 2e-54 AT5G01890 1032 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10042177 [exp] 201 / 3e-54 AT4G36180 1253 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.017G050700.1 pacid=42813662 polypeptide=Potri.017G050700.1.p locus=Potri.017G050700 ID=Potri.017G050700.1.v4.1 annot-version=v4.1 ATGTCATACCTTGCTTTCACCTTCATTTTGTTGATGATCAGCTTCAAGACTCCCTTTATGAGGTGCCAGAATGTCTCATGCAATTCCACTGACCTTAGAG CCTTGATTCGCTTCTCCAATTTCATAGAGTGGGGGCTTGATTGGAGTAGCTCAGAGTCAAATTGTTGCACTTGGACAGGAGTCACTTGTGATAATTCCAC CATTTCAAGTAAAAGGGTAGTCAGGTTAGAGCTTGGAGCAAAAAAACTTGTAGGAAAACTTTCCGAGTCCTTGGCAGATTTGGATCAGCTGCGAATCCTG AACGTCTCTCACAATCTCCTTCGAGGTTATCTTCCAGGAAAGTTATTTGGTTTGCAGAAGCTGGAGATCCTTGACTTGAGCAATAATTATTTTGTCGGTC CTATACCAGGAGGTAGTGATTTACCCTTAATCCGGTACGTTGACATTTCAAAGAACAATTTTAATGGCACTCTTTATGCGACAATTTTCGAAACCTCACC CCATTTTCAAGTTCTCAATCTTGCAAATAATTATTTCACTGGTGAAGTTCCAGCAAGCTTTGGAAGTTGTTATTATCTGCAGCATCTCTTTCTTGATGGA AATGATCTCACAGGAAATTTTCCAGAGAGTCTCCTGCAACTGCGAGATCTTCATACATTGAACATTCAGGATAATTTGTTTTTGGGGTCATTGAATGAAG GAATCAGCAACCTTTCCAACCTTGTGAAATTGGATGTCTCCTTCAACAGGTTTTCTGGAATTCTCCCAGATGTTTTTGAGAGTCTTGGAAAGCTTGAGCA CTTCTCAGCCAGATCGAATATGTTCTACGGGCATTTGCCTAAATCATTGGTGAATTCCCCATCCATAATAACTCTTGATTTAAGCTCCAACGCCCTCAGT GGTATAATCAATATTAACTGTTCAGCAATGCTTCACCTCTCCTCCCTCAGTCTCGGTGCTAATCAATTCTGTGGTCCAGTACCTGAGAGTATATCCTCTT GCCAAAGACTAAGTAACCTGAATCTTGGTCGTAATAACCTTAGTGGAGAAGTTCCTTATGCCTTCAAGGATCTCCAGGCCCTTACTTCCATCTCTCTCTC AAACAGTAGCCTTGTTAACATATCATCAGCACTTGCAATTTTACAACACTGCAAAAACTTAACCTCACTGTTCCTTGGTGACAACTTTCATGATGAGCAA ATGCCTAGAAATATGAATTTGCACTTCAGGAATCTGAAAACACTTGTTATTCCCCATTGTGGACTTAAAGGTCAGTTTCCAATATGGCTGGGTAGCAGCA AGATGTTACAACTTCTGGATATTTCATGGAATCAAATGACTGGAACCATTCCTTCCGGGTTCCATGAGTTCAAATTTCTCTTTTACATGGATCTCTCGCA CAATTCTTTCACTGGTGAAATACCAGTGAGCTTAACCGAGTTAGAAGGCCTAATCAAGAAGAACGTCTCAGAAGAAAGACCTTCCTTAGGCTTCCCACTT TTCAAGGCAAGAAATATGTACAAACAGATTTCGAGTTTTCGACCAACTTTGGATTTGAGTTACAACAAGCTAAGCGGACTGATATGGCCAAGTTTTGGAA ATTTGAAAGAACTACATGTTCTAAATCTGAAGGACAATCATCTGTCAGGAAATATTCCTGACAGTTTATCAGGCATGACGAACTTGGAAGTTTTGGACTT GTCCCAAAATGAATTATCAGGAGAAATACCTCTTTCATTGGAAAAGCTTAGTTTTCTAGCAAGGTTCAGTGTCGCATCCAATCAACTGCATGGAGAAATC CCCAGAGGAGGCCAGTTCTTGACATTTCCATCTCCAAGCTTTGAGGGAAACAAGGGTCTGTTCAGTGATAACGTGACTCCTCGCCAGCCTCAACCAGCTG ATGAAGAAATGACTATCATAGGTTTGCAATTTGGATTTGGAGCTGTCACTGGTTTCCTTCTCACTGTCAGCTTTTGCTTCTTATCTGGTTGGGTGTTCCG GAAGTGA
AA sequence Show only first row Show all	>Potri.017G050700.1 pacid=42813662 polypeptide=Potri.017G050700.1.p locus=Potri.017G050700 ID=Potri.017G050700.1.v4.1 annot-version=v4.1 MSYLAFTFILLMISFKTPFMRCQNVSCNSTDLRALIRFSNFIEWGLDWSSSESNCCTWTGVTCDNSTISSKRVVRLELGAKKLVGKLSESLADLDQLRIL NVSHNLLRGYLPGKLFGLQKLEILDLSNNYFVGPIPGGSDLPLIRYVDISKNNFNGTLYATIFETSPHFQVLNLANNYFTGEVPASFGSCYYLQHLFLDG NDLTGNFPESLLQLRDLHTLNIQDNLFLGSLNEGISNLSNLVKLDVSFNRFSGILPDVFESLGKLEHFSARSNMFYGHLPKSLVNSPSIITLDLSSNALS GIININCSAMLHLSSLSLGANQFCGPVPESISSCQRLSNLNLGRNNLSGEVPYAFKDLQALTSISLSNSSLVNISSALAILQHCKNLTSLFLGDNFHDEQ MPRNMNLHFRNLKTLVIPHCGLKGQFPIWLGSSKMLQLLDISWNQMTGTIPSGFHEFKFLFYMDLSHNSFTGEIPVSLTELEGLIKKNVSEERPSLGFPL FKARNMYKQISSFRPTLDLSYNKLSGLIWPSFGNLKELHVLNLKDNHLSGNIPDSLSGMTNLEVLDLSQNELSGEIPLSLEKLSFLARFSVASNQLHGEI PRGGQFLTFPSPSFEGNKGLFSDNVTPRQPQPADEEMTIIGLQFGFGAVTGFLLTVSFCFLSGWVFRK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G02220		ATPSKR1	phytosulfokin receptor 1 (.1)		Potri.017G050700 [exp]	0	1
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Potri.017G085000 [exp]	1.00	0.9101
AT4G24430			Rhamnogalacturonate lyase fami...		Potri.002G110300 [exp]	1.41	0.8738
AT2G38820			Protein of unknown function (D...		Potri.007G109700 [exp]	2.44	0.8551
					Potri.002G049650 [exp]	5.29	0.7980
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Potri.007G003000 [exp]	6.48	0.8411
AT2G45420	AS2	LBD18, ASL20	LOB domain-containing protein ...		Potri.002G149000 [exp]	6.48	0.8367
AT4G00230		XSP1	xylem serine peptidase 1 (.1)		Potri.002G151900 [exp]	7.41	0.8426
AT4G19670			RING/U-box superfamily protein...		Potri.012G119000 [exp]	7.74	0.8082
AT1G28590			GDSL-like Lipase/Acylhydrolase...		Potri.004G054300 [exp]	8.00	0.8527
AT1G68810	bHLH	bHLH030	basic helix-loop-helix (bHLH) ...		Potri.011G065500 [exp]	10.39	0.7890

Compare expression of checked genes

Potri.017G050700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.