Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64270 2020 / 0 splicing factor, putative (.1) AT1G13320 49 / 3e-05 PR65, PDF2, PP2AA3 protein phosphatase 2A subunit A3 (.1.2.3) AT1G25490 48 / 5e-05 REGA, PR65, EER1, ATBBETABETA, RCN1 ROOTS CURL IN NPA, ENHANCED ETHYLENE RESPONSE 1, ARM repeat superfamily protein (.1) AT3G25800 47 / 7e-05 PP2AA2, PR65, PDF1 protein phosphatase 2A subunit A2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G310900 [exp] 2282 / 0 AT5G64270 2001 / 0.0 splicing factor, putative (.1) Potri.012G062700 [exp] 45 / 0.0004 AT3G25800 1116 / 0.0 protein phosphatase 2A subunit A2 (.1.2) Potri.008G118500 [exp] 44 / 0.001 AT3G25800 1115 / 0.0 protein phosphatase 2A subunit A2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033347 [exp] 2118 / 0 AT5G64270 2168 / 0.0 splicing factor, putative (.1) Lus10034803 [exp] 1953 / 0 AT5G64270 1985 / 0.0 splicing factor, putative (.1) Lus10035038 [exp] 46 / 0.0003 AT3G25800 1134 / 0.0 protein phosphatase 2A subunit A2 (.1.2) Lus10021695 [exp] 45 / 0.0003 AT3G25800 1129 / 0.0 protein phosphatase 2A subunit A2 (.1.2) Lus10034299 [exp] 45 / 0.0004 AT3G25800 1102 / 0.0 protein phosphatase 2A subunit A2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0462 [poplar] [flax] TPA-repeat PF08920 [poplar] [flax] SF3b1 Splicing factor 3B subunit 1
Representative CDS sequence Show only first row Show all	>Potri.017G050800.1 pacid=42814118 polypeptide=Potri.017G050800.1.p locus=Potri.017G050800 ID=Potri.017G050800.1.v4.1 annot-version=v4.1 ATGGACCCCGAAATCGCCAAAACCCAAGAAGAGCGCAAGAAAATGGAACAACAACTTGCCTCTTTAACCTCTTTAACCTTCGATCGTGACTTGTATGGTG GAGTCGACCGTAATGCTTATGAAACATCGATCCCAGCTACCGATGATGAAGAACCCGAAGTGGGTCTTAACGAGGTTGCTCAGAAACTCGCTTCTTATAC TGCCCCGAAATCAGTTCTTAAAGAAATGCCTCGTGGCGGTGATGATAGTGAAGAAGTTAATGGGTTTAGGAAGCCGTCGAGGATTATTGATCGTGAGGAT GATTACAGGAGGAGGAGATTGGATAGGATTATTTCGCCGGAGAGGCACGATCCTTTTTCTGCCGGGGAGAAAACGCCGGATCCCAGTGTGAGGACTTATT CGGATATCATGAAGGAAGAGTCTTTGAAAAGGCAAAAGGAGGAACTTCTAAGGGAAATTGCCAAGAAAAAAAAGGAAGAAGAGGAAGCGAGGGCTGAGAA AGGTGACAAGGGTGAAAAGGAGTCGAATTCGATGGCTAAGAGGAGGAACAGGTGGGACCAATCGATGGAGGATGGTGGAAATGCAGCTAAGAAGGCGAAG ACGGGTTCGGATTGGGATTTACCTGATGCTACACCGGGGATTGGGAGGTGGGATGCGACACCTACTCCAGGGAGGATAGGGGATGCTACGCCAGGTGCTG GGAGGAAGAATAGGTGGGATGAGACTCCTACACCGGGGAGAGTGGCTGATTCAGATGCCACTCCTGCGGGTGGGGTTACACCAGGGGCGACTCCTGCTGG TGTTACTTGGGATTCTACTCCCAAAGGAATGGTTACACCTACACCAAAAAGGCAAAAGTCTCGTTGGGATGAGACTCCAGCTAGTATGGAGAGTGCAACT CCTGCTCTTGGGGGGGTTACTCCTAGTCTTGGTGGTGCGACTCCTGGACCTACTCCTCTTGGTGCAATTGATATGGCTACTCCAACTCCTAATGCACTTG CCATGCGTGGGGCTATAACTCCTGAGCAATATAACTTGCTGAGATGGGAGAAGGATATTGAGGAGAGGAATAGGCCATTGACCGATGAGGAGTTGGATGC TATGTTTCCTCAAGAAGGGTACAAGATTTTGGAGCCGCCGGCTTCTTATGTGCCTATCAGGACACCGGCTAGGAAGTTGTTGGCTACCCCGACACCAATG GGGACTCCTCTTTATTCTATTCCTGATGAGAACAGAGGCCAACAGTTTGACCTGGGGCAGGAGCCTCCTGCTGGGTTGCCATTTATGAAACCTGAGGATT ATCAATATTTTGGGGCTTTGCTGAACGAGGAAGACGAGGAGGAGTTGTCACCAGAGGAGCAGAAAGAGAGGAAGATTATGAAACTGCTACTTAAAGTGAA AAATGGGACACCTCCACAGAGGAAGACTGCTTTAAGGCAATTGACTGATAAGGCTAGAGAGTTTGGCGCTGGGCCATTGTTTAACAGAATTTTACCGCTG CTTATGCAGCCTACCTTGGAGGATCAGGAGAGGCATCTTCTGGTTAAGGTAATTGATAGGGTTTTGTATAAATTGGATGAGTTGGTTAGGCCCTATGTTC ATAAGATTCTTGTTGTTATTGAACCACTCTTGATTGATGAGGATTATTATGCCCGTGTGGAAGGGAGAGAGATTATTTCTAATTTGAGTAAAGCAGCCGG TTTGGCCACCATGATTGCTGCTATGCGTCCTGATATTGATAATATTGATGAGTATGTTAGGAACACAACTGCAAGAGCTTTCAGTGTTGTAGCTTCTGCT CTCGGGATTCCTGCACTGTTGCCCTTCTTGAAAGCTGTGTGCCAGAGTAAGAAATCTTGGCAAGCTCGCCACACTGGAATCAAAATTGTTCAACAGATTG CTATTTTGATTGGCTGTGCTGTTCTTCCCCATTTGCGATCCCTTGTGGAAATCATAGAGCATGGTCTGAATGATGAGAATCAGAAGGTGAGGACAATCAC TGCCTTGTCCTTGGCTGCTCTTGCTGAGGCTTCTGCCCCATATGGTATTGAAAGCTTTGACTCTGTTCTGAAGCCATTGTGGAAGGGAATTAGGTCACAC CGTGGCAAGGTCTTGGCTGCCTTCTTGAAAGCAATTGGTTTTATTATTCCTCTCATGGATGCTATGTATGCCAATTACTACACCAAGGAAGTCATGTTTA TTCTGATACGTGAGTTTCAATCACCTGATGAAGAAATGAAGAAGATTGTGTTGAAGGTGGTTAAGCAATGTGTGAGTACAGAGGGTGTGGAAGCTGAATA TATACGTTCTGATATTCTACCTGAGTTCTTTAAGAACTTCTGGGTTAGAAGAATGGCCTTGGATAGGAGAAATTACAGGCAACTTGTAGAAACGACTGTT GAGATTGCTAACAAGGTTGGTGTTAAAGATATTGTTGGCAGAATTGTTGAGGATCTGAAAGATGAGAGTGAACCTTACAGGCGTATGGTCATGGAAACAA TTGAGAAGGTTGTGACGAACATGGGTTCATCTGATATCGATGCTAGGTTGGAAGAGCTTTTGATTGATGGTATTCTCTATGCTTTCCAAGAGCAGACCAG TGATGATGCTAATGTGATGCTTAATGGGTTTGGTGCGGTTGTCAATTCTCTTGGACAGAGGGTGAAACCTTACCTTCCCCAGATTTGTGGAACCATTAAG TGGCGCTTGAACAACAAGAGTGCTAAAGTGAGACAGCAAGCTGCTGATCTTATATCTAGAATTGCTGTTGTCATGAAGCAGTGCCAGGAAGAACAACTGA TGGGCCATCTTGGTGTAGTGTTGTACGAGTATTTGGGAGAAGAATACCCTGAAGTTCTTGGATCGATTCTAGGAGCTCTCAAAGCAATTGTCAATGTCAT TGGTATGACCAAAATGACTCCTCCTATTAAGGACTTGCTTCCAAGATTAACACCAATTCTGAAGAATAGGCATGAGAAAGTCCAGGAAAACTGTATTGAT CTTGTTGGTCGTATTGCTGATCGTGGAGCTGAGTTTGTTCCTGCCAGGGAGTGGATGAGGATTTGTTTTGAGCTTCTTGAGATGCTTAAGGCCCACAAAA AGGGTATTCGGCGTGCTACTGTTAACACTTTTGGTTACATTGCTAAGGCCATTGGGCCTCAGGATGTTTTGGCTACATTATTAAATAACCTTAAGGTCCA GGAGCGCCAAAACCGTGTTTGCACAACTGTTGCAATTGCTATAGTTGCAGAAACCTGTTCACCTTTTACAGTCTTGCCTGCCTTGATGAACGAATATCGT GTCCCAGAGCTTAATGTGCAGAATGGTGTCTTGAAATCCCTCTCCTTCCTGTTTGAGTACATTGGCGAAATGGGTAAAGACTATATCTATGCAGTGACTC CATTACTTGAGGATGCCCTCATGGACAGAGATCTAGTTCACAGGCAGACTGCAGCTTCCGCTGTTAAGCATATGGCTTTGGGTGTGGCTGGTTTGGGTTG CGAGGATGCATTGGTCCACTTGCTTAACTATGTTTGGCCCAACATTTTTGAGACGTCCCCTCATGTGATAAATGCTGTCATGGAAGCCATTGAAGGAATG AGGGTGGCCTTAGGCGCTGCTGTTGTGTTGAATTACTGTCTCCAGGGACTGTTCCATCCTGCCCGGAAGGTCAGGGAAGTATACTGGAAGATCTACAATT CTCTGTATATTGGATCTCAGGATGCCCTTGTGGCAGCTTATCCTATACTGGACGATGAGCAGAATAACATATATAGTAGACCCGAGTTGATGATGTTTGT TTAA
AA sequence Show only first row Show all	>Potri.017G050800.1 pacid=42814118 polypeptide=Potri.017G050800.1.p locus=Potri.017G050800 ID=Potri.017G050800.1.v4.1 annot-version=v4.1 MDPEIAKTQEERKKMEQQLASLTSLTFDRDLYGGVDRNAYETSIPATDDEEPEVGLNEVAQKLASYTAPKSVLKEMPRGGDDSEEVNGFRKPSRIIDRED DYRRRRLDRIISPERHDPFSAGEKTPDPSVRTYSDIMKEESLKRQKEELLREIAKKKKEEEEARAEKGDKGEKESNSMAKRRNRWDQSMEDGGNAAKKAK TGSDWDLPDATPGIGRWDATPTPGRIGDATPGAGRKNRWDETPTPGRVADSDATPAGGVTPGATPAGVTWDSTPKGMVTPTPKRQKSRWDETPASMESAT PALGGVTPSLGGATPGPTPLGAIDMATPTPNALAMRGAITPEQYNLLRWEKDIEERNRPLTDEELDAMFPQEGYKILEPPASYVPIRTPARKLLATPTPM GTPLYSIPDENRGQQFDLGQEPPAGLPFMKPEDYQYFGALLNEEDEEELSPEEQKERKIMKLLLKVKNGTPPQRKTALRQLTDKAREFGAGPLFNRILPL LMQPTLEDQERHLLVKVIDRVLYKLDELVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASA LGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDENQKVRTITALSLAALAEASAPYGIESFDSVLKPLWKGIRSH RGKVLAAFLKAIGFIIPLMDAMYANYYTKEVMFILIREFQSPDEEMKKIVLKVVKQCVSTEGVEAEYIRSDILPEFFKNFWVRRMALDRRNYRQLVETTV EIANKVGVKDIVGRIVEDLKDESEPYRRMVMETIEKVVTNMGSSDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKPYLPQICGTIK WRLNNKSAKVRQQAADLISRIAVVMKQCQEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCID LVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYR VPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAIEGM RVALGAAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGSQDALVAAYPILDDEQNNIYSRPELMMFV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G64270			splicing factor, putative (.1)		Potri.017G050800 [exp]	0	1
AT1G71210			Pentatricopeptide repeat (PPR)...		Potri.004G229100 [exp]	1.73	0.8690
AT4G11560			bromo-adjacent homology (BAH) ...		Potri.003G127400 [exp]	2.00	0.8851
AT5G56930	C3HZnF	EMB1789	embryo defective 1789, CCCH-ty...		Potri.006G148400 [exp]	3.46	0.8757
AT1G50660			unknown protein		Potri.011G090100 [exp]	3.74	0.8351
AT5G48340			unknown protein		Potri.014G174300 [exp]	4.00	0.8414
AT3G09670			Tudor/PWWP/MBT superfamily pro...		Potri.006G131800 [exp]	5.91	0.8638
AT5G03800		EMB166, EMB175,...	embryo defective 1899, EMBRYO ...		Potri.016G096400 [exp]	8.36	0.8404
AT3G09560		ATPAH1	PHOSPHATIDIC ACID PHOSPHOHYDRO...		Potri.006G214800 [exp]	11.48	0.8357
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Potri.005G026800 [exp]	14.00	0.8671
AT4G00830		LIF2	LHP1-Interacting Factor 2, RNA...		Potri.002G178200 [exp]	14.49	0.8103

Compare expression of checked genes

Potri.017G050800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.