Plant FIBer expression Database

Potri.017G050900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G60600 440 / 4e-154 ABC4 ABERRANT CHLOROPLAST DEVELOPMENT 4, UbiA prenyltransferase family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G311400
[exp]
75 / 2e-16 AT1G60600 48 / 1e-07 ABERRANT CHLOROPLAST DEVELOPMENT 4, UbiA prenyltransferase family protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10043094
[exp]
469 / 4e-166 AT1G60600 396 / 8e-138 ABERRANT CHLOROPLAST DEVELOPMENT 4, UbiA prenyltransferase family protein (.1.2)
Lus10032658
[exp]
471 / 4e-165 AT1G60600 397 / 4e-136 ABERRANT CHLOROPLAST DEVELOPMENT 4, UbiA prenyltransferase family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0613 Terp_synthase PF01040 UbiA UbiA prenyltransferase family
Representative CDS sequence
>Potri.017G050900.1 pacid=42813119 polypeptide=Potri.017G050900.1.p locus=Potri.017G050900 ID=Potri.017G050900.1.v4.1 annot-version=v4.1
ATGGCAGCAGCGTTTTGTAGCCTCCACCAGGGGTCTAGTCTCAAGAAACTCCAATATTATCATGTGAGGCAGAGTTATGCAACAAGGTCTTATCCGGGAG
CTCTTACTTCAAATGCTTCCAAAAAATCATCATTGTGCTGCTGTACTGCCCAGAATTTTGTCTGTGGGAGTCGTATAAGCCGGTTAGAATTCAAGAAAGG
AATTCAATGTTGGCGGGCTTTTTCAGGAAGTATAGCAAATTATGCTGACAAATCACATGAAGGTGAAACTGGGGAGGATGTTCCTAAAGCAACCTTGATA
TGGAGGGCAGTCAAATTGCCTATTTACTCTGTTGCTTTGGTTCCTCTAACTGTAGGTGGTGCAGCTGCTTATTTGCAAACAGGCATGTTTTCAGCAAGAC
GCTACTTTTCGCTCTTGGTTTCTTCAATTCTTATCATAACGTGGCTCAATCTAAGCAACGATGTTTATGATTTCGATACAGGAGCAGATAAGAACAAGAA
AGAATCAGTTGTGAATTTGGTCGGCAGCCGTTCAGTGGCCTTTATTGCTGCTTACTCATCACTTCTACTTGGCTTTGCGGGCCTGGCATGGACTTCTATG
GGGGAAGGAAACATCCATGCAATATTATTCCTGGCTTGTGCAATTCTTTGTGGTTATGTATATCAGTGCCCACCATTTCGGTTAAGTTACCAAGGATTAG
GAGAGCCCTTGTGCTTCGCAGCATTTGGCCCCTTCGCTACTTCTGCCTTCTACTTACTACTTGGCAGCACGAGTGAGATGAGCATTCTTCCATTAACTGG
CACAATTCTTTCTGCATCACTCCTGGTTGGCTTCACAACAACATTAATACTCTTCTGTAGTCACTTTCACCAGGTGGAAGAAGATAAGGCTGTTGGGAAG
TTTTCCCCTTTGGTTAGACTTGGCACTGAAAGAGGTTCTGGAGTGGTGAAAGTAGCTGTCGCAATGCTGTACTCTCTTTTATTTGCTTCTGGTCTAAGCA
GAACTCTTCCTTTAGCTTGCATTCTCCTCTGTTCTCTGACCTTACCTATGGGAAAACTGGTGGTCGGCTTTGTCGAAGAAAACTACAAGGACAAAGGGAA
GATTTTCATGGCAAAGTACTTCTGTGTGAGATTGCATGCCTTATTCGGGGCTGCGTTGGCCTCTGGACTCGTGGCAGCTAGAGTATTTCAAGGATATTTC
CCTTGA
AA sequence
>Potri.017G050900.1 pacid=42813119 polypeptide=Potri.017G050900.1.p locus=Potri.017G050900 ID=Potri.017G050900.1.v4.1 annot-version=v4.1
MAAAFCSLHQGSSLKKLQYYHVRQSYATRSYPGALTSNASKKSSLCCCTAQNFVCGSRISRLEFKKGIQCWRAFSGSIANYADKSHEGETGEDVPKATLI
WRAVKLPIYSVALVPLTVGGAAAYLQTGMFSARRYFSLLVSSILIITWLNLSNDVYDFDTGADKNKKESVVNLVGSRSVAFIAAYSSLLLGFAGLAWTSM
GEGNIHAILFLACAILCGYVYQCPPFRLSYQGLGEPLCFAAFGPFATSAFYLLLGSTSEMSILPLTGTILSASLLVGFTTTLILFCSHFHQVEEDKAVGK
FSPLVRLGTERGSGVVKVAVAMLYSLLFASGLSRTLPLACILLCSLTLPMGKLVVGFVEENYKDKGKIFMAKYFCVRLHALFGAALASGLVAARVFQGYF
P

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G60600 ABC4 ABERRANT CHLOROPLAST DEVELOPME... Potri.017G050900
[exp]
0 1
AT1G14590 Nucleotide-diphospho-sugar tra... Potri.008G142200
[exp]
1.41 0.9180
AT4G24790 AAA-type ATPase family protein... Potri.012G091700
[exp]
11.66 0.8991
AT4G24750 Rhodanese/Cell cycle control p... Potri.015G086100
[exp]
13.63 0.8741
AT1G08980 ATTOC64-I, ATAM... ARABIDOPSIS THALIANA TRANSLOCO... Potri.013G024200
[exp]
13.71 0.8386
AT2G26500 cytochrome b6f complex subunit... Potri.014G037000
[exp]
18.54 0.8870
AT2G41180 SIB2 sigma factor binding protein 2... Potri.006G038900
[exp]
19.44 0.8547
AT4G15560 AtCLA1, DXS, DX... 1-DEOXY-D-XYLULOSE 5-PHOSPHATE... Potri.010G015200
[exp]
24.08 0.8331
AT5G38510 Rhomboid-related intramembrane... Potri.017G112900
[exp]
25.59 0.8808
AT1G48950 C3HC zinc finger-like (.1) Potri.012G058550
[exp]
26.26 0.8005
AT5G24930 CO COL4, ATCOL4 CONSTANS-like 4 (.1) Potri.018G013800
[exp]
26.83 0.8581 Pt-COL1.2

Potri.017G050900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.