Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17840 596 / 0 AtABCG11, WBC11, DSO, ABCG11 ,COF1, ATWBC11 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) AT3G21090 582 / 0 ABCG15 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) AT1G51500 554 / 0 AtABCG12, WBC12, ABCG12, D3, CER5, ATWBC12 ECERIFERUM 5, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX 12, ATP-binding cassette G12, ABC-2 type transporter family protein (.1) AT1G51460 541 / 0 ABCG13 ATP-binding cassette G13, ABC-2 type transporter family protein (.1) AT2G28070 389 / 2e-125 ABCG3 ATP-binding cassette G3, ABC-2 type transporter family protein (.1) AT2G13610 270 / 5e-81 ABCG5 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) AT3G55110 268 / 7e-80 ABCG18 ATP-binding cassette G18, ABC-2 type transporter family protein (.1) AT2G37360 262 / 3e-77 ABCG2 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) AT3G55130 260 / 1e-76 ABCG19, ATWBC19 ATP-binding cassette G19, white-brown complex homolog 19 (.1) AT3G55100 256 / 1e-75 ABCG17 ATP-binding cassette G17, ABC-2 type transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G073100 [exp] 885 / 0 AT1G17840 661 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.005G073050 [exp] 883 / 0 AT1G17840 659 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.001G311300 [exp] 878 / 0 AT1G17840 617 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.001G312300 [exp] 871 / 0 AT1G17840 624 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.017G051300 [exp] 861 / 0 AT1G17840 611 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.017G155300 [exp] 618 / 0 AT1G17840 1174 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.018G152600 [exp] 613 / 0 AT1G17840 1152 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.001G255800 [exp] 573 / 0 AT3G21090 1038 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.009G051200 [exp] 569 / 0 AT3G21090 1008 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023154 [exp] 798 / 0 AT1G17840 613 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Lus10040644 [exp] 550 / 0 AT1G17840 1120 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Lus10009961 [exp] 538 / 0 AT3G21090 971 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10027354 [exp] 533 / 0 AT3G21090 868 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10009959 [exp] 526 / 9e-179 AT3G21090 860 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10009960 [exp] 500 / 2e-169 AT3G21090 855 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10000339 [exp] 494 / 5e-167 AT1G51460 837 / 0.0 ATP-binding cassette G13, ABC-2 type transporter family protein (.1) Lus10031063 [exp] 433 / 3e-143 AT3G21090 659 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10018268 [exp] 421 / 2e-140 AT1G17840 849 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Lus10035445 [exp] 432 / 1e-139 AT3G21090 667 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0181 [poplar] [flax] ABC-2 PF01061 [poplar] [flax] ABC2_membrane ABC-2 type transporter
Representative CDS sequence Show only first row Show all	>Potri.017G051000.1 pacid=42814529 polypeptide=Potri.017G051000.1.p locus=Potri.017G051000 ID=Potri.017G051000.1.v4.1 annot-version=v4.1 ATGCATAATCCCTTTTCACACAGCATGATTAAGTTGCCTGCTGACGGCAAGACTTGCATGGCTTCTTCATCACCTAGCTCCAACTACGAAACAGACCACA GTGCATTGTCTCCAAATGACGAATCTATGGAGGCAGTAGACTTGGAAAATGGCCCAGCCTTTGGAAGCTGTCGGGATGTCCACCGGAAGGATGTTTCAAT AACATGGGAGAACCTTGGGGTGACAGTTTCCGATAGGAAACATGGGTGCAGATCCATTCTTCAAGGACTCACCGGCTATGCTCGGCCTGGGGAGGTCTTG GCAATCATGGGTCCTTCGGGCTGCGGCAAGACTACTCTTCTTGACGCACTAGCTGGGAGATTAGATTCCAGCACAAAGCATACTGGAGAAGTTCTAATCA ATGGTCGAAAACAGCCATTGGCATATGGGACTTCGGCTTATGTGACTCAAGACGATGTTATAACATGGACACTAACCGTAAGAGAAGCTGTCTTCTACTC AGCTCAACTCCAACTACCCAATTCAATGTCATTAAGCAAGAAAAAAGAGCGAGCAGAGACGACAATAAAAGAGATGGGGTTACAAGACTCAATGGACACA AGAATAGGAGGATGGAGCAACAAGGGCCTAAGTAGCGGGCAGAAGAGGAGAGTGAGCATTTGCATAGAGATTTTAACTCGGCCGAAGCTTCTTTTCCTCG ACGAGCCAACAAGTGGACTTGACAGTGCTGCATCATATTATGTTATGAAACGAATGGTCGATCTTGCAAAGCAAGACAGAATGACAATTATTGCATCCAT TCATCAACCTAGCAGTCAAGTCTTTCAGCTCTTTCACAACCTATGCCTTCTGTCTTCTGGACGAACAATATACTTTGGTCGCTCTGATAGAGCTAATAAG TTTTTTGAATTGAACGGTTTCCCTTGCCCGAGTCACCAAAACCCATCTGATCATTACCTACACACAATCAACACAGATTTTGATGAGGACATGGATCAAG GTTTCCATGCAAAGAAAACCACCGAGGAAGCAATCGATTTTCTTGTAAGATCTTATAAATCATCACATGCTTGCCAGCAAATCCAAAGACATGTAGCAGA AATATGTAGCTTGGACAGAGAAGAACTAAAGAAGGGCAGCCAGGCTAACTTCATTTCCCAGTGCCTTATTCTCACAAGAAGGTCTTTTGTGAACATGTAT CGAGATCTAGGCTACTACTGGCTCCGTCTGGCCATTTATATTGCGTTATGTTCAGGCTTAGGATCCGTTTTCTATGACATAGGCTCTGGTTACAGCTCGA TACAGGCAAGAGGTTCACTGCTTATGTTCACTGCTTCCTTCTTGACAATCATGGCTATTGGGGGTTTCCCTTCATTTGTGGAGGACATGAAGGTTTTTCA ACGGGAAAGATTAAACGGACATTATCAGTCGGCTGCATTTGTTGTCAGCAACACAGTTTCTTCAACACCCTTCTTGCTTGTTATATCTTTGATTCCCGGA GCAATAACTTACTACCTTGTTGGCCTCCAACAAGGTTGCGCACAGTTCATCTACTTTGCCTTGACACTCCTTGCCTGTATGATGCTGGTGGAAAGCCTAA TGCTGATTGTTGCAAGCATCATGCCAAATTTCCTGATGGGTCTAATAACAGGAGCAGGGATCCAAGGGTTAATGATACTAAGTGGCGGTTTCTTTCGGCT GCCGCATGATCTTCCCTTAGTTTTCTGGAGATATCCGTTATACTACATTGCTTTCCATAGATATGCGTACCAGGGGCTCTTCAAAAACGAGTTTGAAGGA CTGACATTTCCTAATGGTCAAGTACTGCAAGGAGGAGGGCCCGCTTACATCAAAGGTGAAGAAATTTTGAGAATTATATGGCAGGTGGAAATGCGTTACT CGAAGTGGATGGATCTTGCCATGTTATTTGCAATGGTAGCTTTCTATCGGCTCATGTTGTTAATTGTACTTGGAACTGTTGAAAAGTTTAAGCCTATAAT TAGAGAAATCAAGTTTGTTTTTCTTAGTAAAACAAAAAAATATATTGGTTGA
AA sequence Show only first row Show all	>Potri.017G051000.1 pacid=42814529 polypeptide=Potri.017G051000.1.p locus=Potri.017G051000 ID=Potri.017G051000.1.v4.1 annot-version=v4.1 MHNPFSHSMIKLPADGKTCMASSSPSSNYETDHSALSPNDESMEAVDLENGPAFGSCRDVHRKDVSITWENLGVTVSDRKHGCRSILQGLTGYARPGEVL AIMGPSGCGKTTLLDALAGRLDSSTKHTGEVLINGRKQPLAYGTSAYVTQDDVITWTLTVREAVFYSAQLQLPNSMSLSKKKERAETTIKEMGLQDSMDT RIGGWSNKGLSSGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYYVMKRMVDLAKQDRMTIIASIHQPSSQVFQLFHNLCLLSSGRTIYFGRSDRANK FFELNGFPCPSHQNPSDHYLHTINTDFDEDMDQGFHAKKTTEEAIDFLVRSYKSSHACQQIQRHVAEICSLDREELKKGSQANFISQCLILTRRSFVNMY RDLGYYWLRLAIYIALCSGLGSVFYDIGSGYSSIQARGSLLMFTASFLTIMAIGGFPSFVEDMKVFQRERLNGHYQSAAFVVSNTVSSTPFLLVISLIPG AITYYLVGLQQGCAQFIYFALTLLACMMLVESLMLIVASIMPNFLMGLITGAGIQGLMILSGGFFRLPHDLPLVFWRYPLYYIAFHRYAYQGLFKNEFEG LTFPNGQVLQGGGPAYIKGEEILRIIWQVEMRYSKWMDLAMLFAMVAFYRLMLLIVLGTVEKFKPIIREIKFVFLSKTKKYIG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Potri.017G051000 [exp]	0	1
AT3G10720			Plant invertase/pectin methyle...		Potri.010G247700 [exp]	1.73	0.8619
AT4G02860			Phenazine biosynthesis PhzC/Ph...		Potri.010G175701 [exp]	16.49	0.8001
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Potri.009G154600 [exp]	18.97	0.7762
AT1G21740			Protein of unknown function (D...		Potri.004G177200 [exp]	20.00	0.7965
AT3G62270			HCO3- transporter family (.1)		Potri.015G077600 [exp]	20.78	0.7832
AT3G60750			Transketolase (.1.2)		Potri.010G224600 [exp]	21.90	0.7276
AT5G57420	AUX_IAA	IAA33	indole-3-acetic acid inducible...		Potri.006G166900 [exp]	25.69	0.7737
AT2G41480			Peroxidase superfamily protein...		Potri.016G125000 [exp]	27.87	0.7543
					Potri.003G204475 [exp]	29.32	0.7549
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Potri.003G142400 [exp]	31.03	0.7781

Compare expression of checked genes

Potri.017G051000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.