Plant FIBer expression Database

Potri.017G051500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G21110 592 / 0 PUR7, ATPURC PURIN C, purin 7 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025652
[exp]
612 / 0 AT3G21110 573 / 0.0 PURIN C, purin 7 (.1.2)
Lus10018182
[exp]
587 / 0 AT5G36230 623 / 0.0 ARM repeat superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01259 SAICAR_synt SAICAR synthetase
Representative CDS sequence
>Potri.017G051500.2 pacid=42813472 polypeptide=Potri.017G051500.2.p locus=Potri.017G051500 ID=Potri.017G051500.2.v4.1 annot-version=v4.1
ATGGCTCAGTGTATGAGAACCACCTTAAACCCACCCAAAACCCTCCTCCGCAACCCCACTAAATCCTCACCAGTTTCCAGTCCCTTGTTTCATCTACCAA
AATCAAAGAAACACTCAAGAATTTCCATGTCACAACAAAATCAACAAGAATTGTCCCTTGATTCTCTAATCAGCAGCACCCGCAAAGAAGAGGTCCTTGG
TGCCATCAAGGGCTCTTTGTCTAATTGTCTCTGGGAGACCAATCTTCTTAAGACTGTCCCTGCTCTCAAATCCAAAGTTAGGGGCAAGGTGAGAGATATA
TATGATGGCGGGGATTATCTTGTTTTGGTCACAACAGATAGGCAGAGCGCATTTGATAAAATTCTCGCTTCTATTCCCTTCAAAGGACAGGTTTTAAATG
AGACCAGTCTATGGTGGTTTGATAGAACTCGGCATATAACCCAGAATGCTATTGTATCATCTCCCGATAAAAATGTCACAATTGCGAAGAAATGTTCTGT
TTTTCCTGTTGAATTTGTTGTTAGAGGTTATGTGACTGGAAGTACTGATACGTCACTATGGACGGTTTATAAAAATGGTGTCCGGAATTACTGCGGCAAT
GCCCTCCCAGACGGCTTGGTAAAAAGCCAAAAGCTACCTTCAAATATACTCACTCCAACTACCAAAGCTGATGATCATGATGTTCCTATAACCCCTGAGG
AGATTGTTAAAAGTGGACTGATGACTGAAGCTGATTATTGTGAAGCCAGTAGTAAAGCGTTGAGCCTGTTTGAATATGGGCAGCGTGTGGCTTTAGAGCA
TGGCTTGATATTAGTAGACACAAAATATGAATTTGGAAAGGGCTCTGATGGCTCAGTTCTATTGATTGATGAGGTTCATACACCTGACTCAAGCAGATAT
TGGATTGCCCATTCTTATGAGGAGCGGATTCAGAAAGGCCTCGAACCTGAAAATGTGGATAAGGAGTTCTTGAGGTTATGGTTCAAGGATCACTGCAATC
CTTACGAAGACAAGGTCCTCCCTGATGCTCCTGAAGATCTTGTTTGTGAGCTAGCTTGGCGGTATATTTTCTTGTATGAGACAATAACAAAATCAAAATT
TGAGTTGCCATTGACAGAGGAGCCAATACATGATCGGATCTCAAGAAATGTTGAACTAGCACTATCATCCTTACGGTGA
AA sequence
>Potri.017G051500.2 pacid=42813472 polypeptide=Potri.017G051500.2.p locus=Potri.017G051500 ID=Potri.017G051500.2.v4.1 annot-version=v4.1
MAQCMRTTLNPPKTLLRNPTKSSPVSSPLFHLPKSKKHSRISMSQQNQQELSLDSLISSTRKEEVLGAIKGSLSNCLWETNLLKTVPALKSKVRGKVRDI
YDGGDYLVLVTTDRQSAFDKILASIPFKGQVLNETSLWWFDRTRHITQNAIVSSPDKNVTIAKKCSVFPVEFVVRGYVTGSTDTSLWTVYKNGVRNYCGN
ALPDGLVKSQKLPSNILTPTTKADDHDVPITPEEIVKSGLMTEADYCEASSKALSLFEYGQRVALEHGLILVDTKYEFGKGSDGSVLLIDEVHTPDSSRY
WIAHSYEERIQKGLEPENVDKEFLRLWFKDHCNPYEDKVLPDAPEDLVCELAWRYIFLYETITKSKFELPLTEEPIHDRISRNVELALSSLR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G21110 PUR7, ATPURC PURIN C, purin 7 (.1.2) Potri.017G051500
[exp]
0 1
AT4G30840 Transducin/WD40 repeat-like su... Potri.006G180300
[exp]
2.44 0.8685
AT5G40200 DEGP9 DegP protease 9 (.1) Potri.012G077900
[exp]
4.47 0.8703
AT4G36580 AAA-type ATPase family protein... Potri.007G023900
[exp]
7.34 0.8757
AT1G72280 AERO1 endoplasmic reticulum oxidored... Potri.011G139900
[exp]
7.34 0.8459 Pt-AERO1.2
AT1G64600 methyltransferases;copper ion ... Potri.001G086800
[exp]
7.48 0.8593
AT5G39960 GTP binding;GTP binding (.1) Potri.004G230600
[exp]
8.36 0.8677
AT1G06440 Ubiquitin carboxyl-terminal hy... Potri.002G245100
[exp]
8.88 0.8764
AT5G63110 RPD3B, CAT1, AX... RNA-MEDIATED TRANSCRIPTIONAL S... Potri.012G083800
[exp]
10.19 0.8543 Pt-HDA6.2,HDA909
AT3G22330 ATRH53, PMH2 putative mitochondrial RNA hel... Potri.006G024100
[exp]
11.74 0.8754
AT5G19750 Peroxisomal membrane 22 kDa (M... Potri.006G032500
[exp]
13.85 0.8409

Potri.017G051500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.