Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64260 439 / 1e-156 EXL2, MSJ1.10 EXORDIUM like 2 (.1) AT5G09440 353 / 5e-123 EXL4 EXORDIUM like 4 (.1) AT4G08950 335 / 2e-115 EXO EXORDIUM, Phosphate-responsive 1 family protein (.1) AT1G35140 317 / 1e-108 EXL1, EXL7, PHI-1 PHOSPHATE-INDUCED 1, EXORDIUM like 1, Phosphate-responsive 1 family protein (.1) AT3G02970 160 / 7e-47 EXL6 EXORDIUM like 6 (.1) AT5G51550 156 / 3e-45 EXL3 EXORDIUM like 3 (.1) AT2G17230 149 / 2e-42 EXL5 EXORDIUM like 5 (.1) AT2G35150 138 / 1e-38 EXL7, EXL1 EXORDIUM LIKE 7, EXORDIUM like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G311700 [exp] 546 / 0 AT5G64260 444 / 2e-158 EXORDIUM like 2 (.1) Potri.005G163000 [exp] 426 / 1e-151 AT5G64260 379 / 8e-133 EXORDIUM like 2 (.1) Potri.002G098600 [exp] 350 / 2e-121 AT4G08950 404 / 4e-142 EXORDIUM, Phosphate-responsive 1 family protein (.1) Potri.005G163700 [exp] 349 / 6e-121 AT4G08950 431 / 4e-153 EXORDIUM, Phosphate-responsive 1 family protein (.1) Potri.005G163500 [exp] 348 / 2e-120 AT4G08950 430 / 2e-152 EXORDIUM, Phosphate-responsive 1 family protein (.1) Potri.005G163600 [exp] 346 / 1e-119 AT4G08950 438 / 1e-155 EXORDIUM, Phosphate-responsive 1 family protein (.1) Potri.005G163300 [exp] 343 / 1e-118 AT4G08950 436 / 8e-155 EXORDIUM, Phosphate-responsive 1 family protein (.1) Potri.002G098800 [exp] 342 / 6e-118 AT4G08950 430 / 1e-152 EXORDIUM, Phosphate-responsive 1 family protein (.1) Potri.014G126000 [exp] 230 / 3e-74 AT5G64260 240 / 9e-78 EXORDIUM like 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010352 [exp] 360 / 4e-125 AT5G64260 378 / 2e-132 EXORDIUM like 2 (.1) Lus10021370 [exp] 319 / 5e-109 AT4G08950 403 / 1e-141 EXORDIUM, Phosphate-responsive 1 family protein (.1) Lus10017050 [exp] 318 / 2e-108 AT4G08950 404 / 2e-142 EXORDIUM, Phosphate-responsive 1 family protein (.1) Lus10036484 [exp] 286 / 2e-96 AT5G64260 301 / 2e-102 EXORDIUM like 2 (.1) Lus10013789 [exp] 211 / 7e-67 AT5G64260 203 / 1e-63 EXORDIUM like 2 (.1) Lus10039143 [exp] 204 / 2e-64 AT5G64260 202 / 1e-63 EXORDIUM like 2 (.1) Lus10031130 [exp] 150 / 5e-43 AT5G51550 526 / 0.0 EXORDIUM like 3 (.1) Lus10018314 [exp] 127 / 3e-34 AT2G35150 395 / 5e-138 EXORDIUM LIKE 7, EXORDIUM like 1 (.1) Lus10031709 [exp] 121 / 1e-32 AT5G51550 377 / 2e-132 EXORDIUM like 3 (.1) Lus10026548 [exp] 122 / 2e-32 AT2G17230 499 / 2e-178 EXORDIUM like 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04674 [poplar] [flax] Phi_1 Phosphate-induced protein 1 conserved region
Representative CDS sequence Show only first row Show all	>Potri.017G051700.1 pacid=42814577 polypeptide=Potri.017G051700.1.p locus=Potri.017G051700 ID=Potri.017G051700.1.v4.1 annot-version=v4.1 ATGGCTTTTAATTACTACTTCACCACTCTGGCTTTTCTCCTCTGTTTCCTTGCCCCTTCATTCGCGGCTCTGGTTCAAGAACAGCCTTTGGTGCTGAAAT ACCATAACGGCATCCTCTTGAAAGGAAACATCACCGTTAATCTAATCTGGTATGGCCAGTTTACACCAATCCAGCGGTCCATAATCGTTGACTTCATCAA CTCCTTGAACTCTAAAGGGGCCCCACTTCCTTCTACCTCGTCATGGTGGAAAACAACTGAGAAATACCGTGGTGGCTCCTCCTCGCTCAGCGTAGGCCAT CAAATCCTTCATGAAGAGTACACGCTCGGCAAAATCTTGAAGTCCCAACATTTGATAGCTCTGGCTTCGAAAACCCATTTCGCCGTTAGCTCTATCAACG TAGTTTTGACGGCAAAAGATGTTGTCGTTGATGGGTTTTGCATGAGCAAGTGTGGGACTCACGGGTCAACAAAGTCCGGCTCGGGTCGGGGCACGTACAT TTGGGTCGGTAATTCTGACCTCCAATGTCCGGGTCAGTGTGCCTGGCCATTCCACCAGCCAATTTATGGCCCACAAACACCACCGCTGATAGCACCCAAC GGAGACGTTGGAGTTGACGGGATGGTCATCAACTTGGCCACTTTGTTTGCTAACACCGTTACCAACCCGTTCAATAGTGGGTATTTTCAGGGCCCACCCA CCGCTCCTTTGGAGGCTGTTTCGGCCTGTACCGGGCAGTTCGGGTCCGGGTCGTACCCGGGCTATCCTGGCCGGGTCCTGGTTGATAAGGTCACGGGTGC TAGCTTCAATGCTTATGGCGTGAACGGAAGGAAGTATATGTTGCCTGCTATGTGGGATCCACAATCAAGTGCATGCAAGACACTTGTGTGA
AA sequence Show only first row Show all	>Potri.017G051700.1 pacid=42814577 polypeptide=Potri.017G051700.1.p locus=Potri.017G051700 ID=Potri.017G051700.1.v4.1 annot-version=v4.1 MAFNYYFTTLAFLLCFLAPSFAALVQEQPLVLKYHNGILLKGNITVNLIWYGQFTPIQRSIIVDFINSLNSKGAPLPSTSSWWKTTEKYRGGSSSLSVGH QILHEEYTLGKILKSQHLIALASKTHFAVSSINVVLTAKDVVVDGFCMSKCGTHGSTKSGSGRGTYIWVGNSDLQCPGQCAWPFHQPIYGPQTPPLIAPN GDVGVDGMVINLATLFANTVTNPFNSGYFQGPPTAPLEAVSACTGQFGSGSYPGYPGRVLVDKVTGASFNAYGVNGRKYMLPAMWDPQSSACKTLV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G64260		EXL2, MSJ1.10	EXORDIUM like 2 (.1)		Potri.017G051700 [exp]	0	1
AT2G39110			Protein kinase superfamily pro...		Potri.010G225300 [exp]	3.31	0.7972
AT5G41350			RING/U-box superfamily protein...		Potri.001G101700 [exp]	6.70	0.7616
AT5G18130			unknown protein		Potri.013G057200 [exp]	10.14	0.8303
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.017G150000 [exp]	12.88	0.8159
AT1G45249	bZIP	AtABF2, ATAREB1...	ABSCISIC ACID RESPONSIVE ELEME...		Potri.014G028200 [exp]	14.96	0.7917	Pt-ABF2.1
AT3G20770	EIL	AtEIN3, EIN3	ETHYLENE-INSENSITIVE3, Ethylen...		Potri.008G011300 [exp]	16.88	0.8159	CMEIL2.2,EIN3D
AT1G60420			DC1 domain-containing protein ...		Potri.002G017200 [exp]	18.11	0.8043
AT3G15095		HCF243	high chlorophyll fluorescence ...		Potri.011G097700 [exp]	18.97	0.7272
AT3G15350			Core-2/I-branching beta-1,6-N-...		Potri.011G119600 [exp]	22.20	0.7868
AT1G72690			unknown protein		Potri.017G119600 [exp]	27.27	0.7957

Compare expression of checked genes

Potri.017G051700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.