Plant FIBer expression Database

Potri.017G051800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G64250 510 / 0 Aldolase-type TIM barrel family protein (.1.2)
AT3G14150 49 / 3e-06 Aldolase-type TIM barrel family protein (.1.2)
AT3G14130 45 / 3e-05 Aldolase-type TIM barrel family protein (.1)
AT1G79470 43 / 0.0002 Aldolase-type TIM barrel family protein (.1)
AT1G16350 42 / 0.0004 Aldolase-type TIM barrel family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G069300
[exp]
41 / 0.0008 AT3G14130 518 / 0.0 Aldolase-type TIM barrel family protein (.1)
Potri.003G069400
[exp]
41 / 0.0009 AT3G14130 529 / 0.0 Aldolase-type TIM barrel family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003271
[exp]
486 / 5e-174 AT5G64250 479 / 3e-171 Aldolase-type TIM barrel family protein (.1.2)
Lus10006545
[exp]
302 / 5e-103 AT5G64250 293 / 7e-100 Aldolase-type TIM barrel family protein (.1.2)
Lus10001763
[exp]
42 / 0.0007 AT1G54310 653 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0036 TIM_barrel PF01070 FMN_dh FMN-dependent dehydrogenase
CL0036 TIM_barrel PF03060 NMO Nitronate monooxygenase
Representative CDS sequence
>Potri.017G051800.1 pacid=42814631 polypeptide=Potri.017G051800.1.p locus=Potri.017G051800 ID=Potri.017G051800.1.v4.1 annot-version=v4.1
ATGGGTTGGAGAGGGATTCTGGGTTTTGAATATGGGATTGTACAAGCACCATTAGGACCCGATATTTCAGGTCCAGAGCTTGTTGCTGCTGTTGCTAATG
CTGGTGGGCTTGGTTTGCTTAGAGCTCCTGATTGGGAATCACCTGATTACTTACGGGAACTGATAAGGAAAACACGAAGCTTAACTGACAAACCATTTGG
GGTTGGTCTTGTTCTGGCATTTCCACATGAGGAGAATCTAAAGGTTATATTGGATGAGAAGGTAGCCGTTTTGCAAGTTTATTGGGGTGAATGTTCAAAA
GAGCTTGTGCTTGAGGCTCATCTTGCTGGAGTCAAGGTTGTTCCACAAGTTGGGAGCTTTGAAGATGCAAGAAAAGCAATTGATGCAGGTGTAGATGGAA
TTATTGTTCAAGGACGTGAAGCTGGAGGGCATGTAATTGGTCAGGAAGGTTTAATTTCAATATTGCCAAGGGTAGTAGACCTTGTTGGTGATCGCGATAT
ACCTGTAATTGCTGCTGGAGGTATTGTTAATGCACGTGGCTATGTTGCAGCTTTGGCTCTTGGAGCTAAAGGGGTCTGTCTAGGCACGAGGTTTGTTGCG
ACTGAGGAAAGCAATGCTCATCCCACATACAAAAGGAAGTTAGTTGAGCTTGATAGAACTGAATATACAAATATATTTGGTCGAGCGAGGTGGCCGAATG
CACCACAGCGTGCTCTGGTTACTCCTTTCTTCAATGATTGGAAGTCCCTTCCACCTCATGAAAATGAGATCAACCAACCAGTCATTGGTCGTTCAACAAT
TAATGGAGAGGAAAAAGAGATTCGGCGTTTCGGAGGTCCTGTTCCTAATATGACCACGACAGGTGACATTGAGAGCATGGCAATGTATGCAGGTCAAGGA
GTAGGCCTTATCAAAGAAATTTGGCCTGCATCTGAAGTGATTAAAAGGCTAGTTGAAGGAGCTCAACAACTGATCCGTGGAGAATTTGCTGGTCTGTAA
AA sequence
>Potri.017G051800.1 pacid=42814631 polypeptide=Potri.017G051800.1.p locus=Potri.017G051800 ID=Potri.017G051800.1.v4.1 annot-version=v4.1
MGWRGILGFEYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWESPDYLRELIRKTRSLTDKPFGVGLVLAFPHEENLKVILDEKVAVLQVYWGECSK
ELVLEAHLAGVKVVPQVGSFEDARKAIDAGVDGIIVQGREAGGHVIGQEGLISILPRVVDLVGDRDIPVIAAGGIVNARGYVAALALGAKGVCLGTRFVA
TEESNAHPTYKRKLVELDRTEYTNIFGRARWPNAPQRALVTPFFNDWKSLPPHENEINQPVIGRSTINGEEKEIRRFGGPVPNMTTTGDIESMAMYAGQG
VGLIKEIWPASEVIKRLVEGAQQLIRGEFAGL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G64250 Aldolase-type TIM barrel famil... Potri.017G051800
[exp]
0 1
AT2G40390 unknown protein Potri.010G183100
[exp]
2.00 0.8365
AT4G16260 Glycosyl hydrolase superfamily... Potri.010G142800
[exp]
2.82 0.7942 HGN1.1
AT5G04590 SIR sulfite reductase (.1) Potri.001G257000
[exp]
6.63 0.7480 Pt-SIR.2
AT5G59080 unknown protein Potri.009G038300
[exp]
8.94 0.7699
AT2G18160 bZIP GBF5, ATBZIP2 G-BOX BINDING FACTOR 5, basic ... Potri.005G119300
[exp]
9.32 0.7709
AT2G46110 PANB1, KPHMT1 ketopantoate hydroxymethyltran... Potri.014G090500
[exp]
10.72 0.7671
AT5G17380 Thiamine pyrophosphate depende... Potri.004G094600
[exp]
11.40 0.7482
AT2G19940 oxidoreductases, acting on the... Potri.004G145700
[exp]
12.00 0.7365
AT2G46370 FIN219, JAR1 JASMONATE RESISTANT 1, FAR-RED... Potri.014G095500
[exp]
12.00 0.7484
AT1G08630 THA1 threonine aldolase 1 (.1.2.3.4... Potri.019G018500
[exp]
15.49 0.7246

Potri.017G051800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.