Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34780 47 / 7e-08 SAUR-like auxin-responsive protein family (.1) AT4G38860 39 / 0.0001 SAUR-like auxin-responsive protein family (.1) AT2G16580 38 / 0.0002 SAUR-like auxin-responsive protein family (.1) AT2G21210 37 / 0.0004 SAUR-like auxin-responsive protein family (.1) AT2G21220 37 / 0.0006 SAUR-like auxin-responsive protein family (.1) AT4G38850 36 / 0.0008 SAUR-AC1, ATSAUR15, ATSR15AU, SAUR15, SAUR_AC1 SMALL AUXIN UP RNA 1 FROM ARABIDOPSIS THALIANA ECOTYPE COLUMBIA, ARABIDOPSIS COLUMBIA SAUR GENE 1, ARABIDOPSIS THALIANA SMALL AUXIN UPREGULATED 15, SAUR-like auxin-responsive protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G112000 [exp] 146 / 8e-47 AT2G16580 49 / 2e-08 SAUR-like auxin-responsive protein family (.1) Potri.005G237200 [exp] 39 / 5e-05 AT1G75580 164 / 5e-54 SAUR-like auxin-responsive protein family (.1) Potri.009G127400 [exp] 39 / 9e-05 AT4G34770 111 / 3e-33 SAUR-like auxin-responsive protein family (.1) Potri.002G024300 [exp] 36 / 0.0009 AT1G75580 170 / 2e-56 SAUR-like auxin-responsive protein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042378 [exp] 40 / 3e-05 AT4G34810 129 / 3e-40 SAUR-like auxin-responsive protein family (.1) Lus10026294 [exp] 39 / 0.0001 AT4G34810 124 / 3e-38 SAUR-like auxin-responsive protein family (.1) Lus10012185 [exp] 37 / 0.0007 AT4G34770 139 / 3e-44 SAUR-like auxin-responsive protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02519 [poplar] [flax] Auxin_inducible Auxin responsive protein
Representative CDS sequence Show only first row Show all	>Potri.017G052501.1 pacid=42813862 polypeptide=Potri.017G052501.1.p locus=Potri.017G052501 ID=Potri.017G052501.1.v4.1 annot-version=v4.1 ATGAGAAAGATTCAAGAGAGTATCCGATCCCTAGCAACAAAGTTAAAGTTAAGGAAGCAGAAGAAGGGTTTCGAAAAGCAAGAACCTATACGATGCAACC ACTTCCCAGTGTATGTTGGTGATCAAGAACTTGATGAAAAGCTAAATCGTTACGATGTTCCTGTTGCATGCACATCTTCCATAATTTTTCAAGCTTTGCT ACGTCAGTTCGAGGATATCCTACGGGTAGAGGAAGGGCCAATCACAATCTCTTGCTCAAAACAGATGTTCGAGTCGGTGCTCAAACTTTCCCTTGAGGAG TCAAGTATAGCAGAGGTTCGTGATTCATGA
AA sequence Show only first row Show all	>Potri.017G052501.1 pacid=42813862 polypeptide=Potri.017G052501.1.p locus=Potri.017G052501 ID=Potri.017G052501.1.v4.1 annot-version=v4.1 MRKIQESIRSLATKLKLRKQKKGFEKQEPIRCNHFPVYVGDQELDEKLNRYDVPVACTSSIIFQALLRQFEDILRVEEGPITISCSKQMFESVLKLSLEE SSIAEVRDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34780			SAUR-like auxin-responsive pro...		Potri.017G052501 [exp]	0	1
AT4G02250			Plant invertase/pectin methyle...		Potri.004G016500 [exp]	3.74	0.6878
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.004G218101 [exp]	4.89	0.6938
					Potri.006G152300 [exp]	8.24	0.6469
AT3G01570			Oleosin family protein (.1)		Potri.001G345800 [exp]	9.16	0.6656
					Potri.016G095001 [exp]	13.78	0.6042
AT5G62380	NAC	ANAC101, VND6	VASCULAR-RELATED NAC-DOMAIN 6,...		Potri.014G163600 [exp]	25.74	0.5837
AT3G05610			Plant invertase/pectin methyle...		Potri.005G022900 [exp]	27.22	0.6012	PEF1.2
AT4G18770	MYB	ATMYB98	myb domain protein 98 (.1)		Potri.015G077700 [exp]	28.84	0.5825
					Potri.013G005750 [exp]	30.85	0.6225
AT2G31480			unknown protein		Potri.007G127200 [exp]	34.46	0.6332

Compare expression of checked genes

Potri.017G052501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.