Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02170 378 / 1e-129 AtMCP1b, ATMC1, LOL3, ATMCPB1, MCP1B, AMC1 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) AT5G64240 343 / 1e-115 AtMCP1a, ATMC3 metacaspase 1a, metacaspase 3 (.1.2) AT4G25110 337 / 2e-112 AtMCP1c, ATMC2 metacaspase 1c, metacaspase 2 (.1.2) AT1G79320 99 / 1e-22 AtMCP2c, ATMC6 metacaspase 2c, metacaspase 6 (.1) AT1G79340 98 / 5e-22 AtMCP2d, ATMC4 metacaspase 2d, metacaspase 4 (.1) AT1G79330 97 / 7e-22 ATMC5, AMC6, ATMCP2B metacaspase 2b, metacaspase 5 (.1) AT1G79310 95 / 4e-21 AtMCP2a, ATMC7 metacaspase 2a, metacaspase 7 (.1) AT1G16420 90 / 2e-19 AtMCP2e, ATMC8 metacaspase 2e, ARABIDOPSIS THALIANA METACASPASE 8, metacaspase 8 (.1) AT5G04200 86 / 1e-18 AtMCP2f, ATMC9 metacaspase 2f, metacaspase 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G052500 [exp] 384 / 1e-131 AT1G02170 513 / 0.0 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.012G112200 [exp] 372 / 5e-127 AT1G02170 446 / 4e-157 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.012G113100 [exp] 365 / 2e-124 AT1G02170 471 / 3e-167 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.012G112700 [exp] 362 / 2e-123 AT1G02170 460 / 9e-163 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.017G052600 [exp] 275 / 4e-89 AT1G02170 254 / 8e-82 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.017G053000 [exp] 272 / 5e-88 AT1G02170 208 / 4e-64 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.017G052900 [exp] 247 / 7e-78 AT1G02170 198 / 6e-60 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.010G175000 [exp] 100 / 4e-23 AT1G79340 496 / 2e-175 metacaspase 2d, metacaspase 4 (.1) Potri.008G081100 [exp] 95 / 4e-21 AT1G79330 510 / 0.0 metacaspase 2b, metacaspase 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010766 [exp] 389 / 2e-135 AT1G02170 293 / 1e-98 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10009321 [exp] 393 / 8e-135 AT1G02170 327 / 8e-110 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10015843 [exp] 393 / 8e-135 AT1G02170 329 / 2e-110 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10028157 [exp] 352 / 3e-118 AT1G02170 540 / 0.0 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10035628 [exp] 335 / 1e-112 AT1G02170 270 / 4e-88 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10042857 [exp] 333 / 2e-112 AT1G02170 501 / 3e-179 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10035630 [exp] 239 / 2e-75 AT5G64240 214 / 1e-66 metacaspase 1a, metacaspase 3 (.1.2) Lus10010764 [exp] 251 / 5e-74 AT1G02170 216 / 5e-62 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10012106 [exp] 94 / 5e-21 AT5G04200 392 / 2e-137 metacaspase 2f, metacaspase 9 (.1) Lus10001761 [exp] 93 / 2e-20 AT1G79340 560 / 0.0 metacaspase 2d, metacaspase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0093 [poplar] [flax] Peptidase_CD PF00656 [poplar] [flax] Peptidase_C14 Caspase domain CL0093 [poplar] [flax] PF06943 [poplar] [flax] zf-LSD1 LSD1 zinc finger
Representative CDS sequence Show only first row Show all	>Potri.017G053100.3 pacid=42812885 polypeptide=Potri.017G053100.3.p locus=Potri.017G053100 ID=Potri.017G053100.3.v4.1 annot-version=v4.1 ATGGTGGGCACAAGAGCAAAAGGGAAAGTAGAAGGAGGTATACAGCAGACGAAAGTCACCACCAGCGTTCCAGCCAGAGCTTCGCCATCGTCTCCGTCGC CTCTAACAAAGCAGCCTCAGGGAAAGGAAATGGCAATAGAAAAATGTAGCCGGTGTGGTGTGCAACTAGTTGTGCCCCCAGACGCTCAAGCGATTCGATG TGCTGTGTGTCAAGCCGTCACCAGGGTTCATTCCTACTACCCTCTGGCTCAAGCCCGCGAGTCAGCTAGCAGGATTACTTCTGGTCTTATTAGCATGGTT TCTGGCAACATTACCACCATGACTAGTTCGGTTAGTAGCAGTAGCTATCCTGTGCCGGGTTATGGTGGTTATTATGCTCAGCCACCAATTAGGCCCGTAC TGCAGTTGCCTCTTCCTTCAATGCATGGGAGGAAACGGGCTCTGCTTTGTGGAGTAAGCTATCGAGGCAAGAGTTATAAGATCAAAGGAAGTATTAATGA TGTTAAGTGCATGAGATATTTTCTTGTCGAGAAGTTTGGGTTTCCCAATGACTCCATACTCATGCTCACAGAAGATGAGACAAACCCATTACAGATACCA ACAAAAGAGAACATAAGGCTGGCTTTAAGGTGGCTTGTTCAAGGCTGCCAGCCAGGGGACTCGTTAGTGTTTCACTTCTCTGGCCATGGTTCAAAGCAAC TTGATTATGACATGGATGAGGTTGATGGGTTTGATGAAACTTTATGCCCCCTTGACTATGAAACTCAAGGGATGATAGTTGATGATGAAATCAATGAGAC CATTGTAAGGCCATTGCCACAAGGAGTCACACTTCATGCCATTATTGATGCCTGCTATAGTCAAACTATGCTTGATCTTCCATTTGTGTGCAGGATGAAT AGGGAAGGATACTATACATGGGAGGACCAAACTCTTTCACCATATGCTTGTAAAGGCACGAGTGGAGGGCTGGCACTTTGTATCAGTGCTTGCGATGATA ATCAAACCAGTGTTGATACGACAGCATTGGCAGGCAATGTTTCGACTGGTGCCTTGACGTATTGCTTCATCCAAGCAGTGCAAAATGAACCTGGATTAAC ATATGGACGCCTGCTTAATTCTATGCGCCAGGTGATTCGTGGGGCGAAAACTGGTGGATTACGCCTAAATGGTCCCATCGCATCCCTAGTAAATAAAGCT CTGTTCAACACTGAGATAACACAGGAGCCTCAGCTTTCCTCGTCCGAGACATTTGACATCTACGCGAAGCAGTTTATACTGTAA
AA sequence Show only first row Show all	>Potri.017G053100.3 pacid=42812885 polypeptide=Potri.017G053100.3.p locus=Potri.017G053100 ID=Potri.017G053100.3.v4.1 annot-version=v4.1 MVGTRAKGKVEGGIQQTKVTTSVPARASPSSPSPLTKQPQGKEMAIEKCSRCGVQLVVPPDAQAIRCAVCQAVTRVHSYYPLAQARESASRITSGLISMV SGNITTMTSSVSSSSYPVPGYGGYYAQPPIRPVLQLPLPSMHGRKRALLCGVSYRGKSYKIKGSINDVKCMRYFLVEKFGFPNDSILMLTEDETNPLQIP TKENIRLALRWLVQGCQPGDSLVFHFSGHGSKQLDYDMDEVDGFDETLCPLDYETQGMIVDDEINETIVRPLPQGVTLHAIIDACYSQTMLDLPFVCRMN REGYYTWEDQTLSPYACKGTSGGLALCISACDDNQTSVDTTALAGNVSTGALTYCFIQAVQNEPGLTYGRLLNSMRQVIRGAKTGGLRLNGPIASLVNKA LFNTEITQEPQLSSSETFDIYAKQFIL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Potri.017G053100 [exp]	0	1
AT3G57230	MADS	AGL16	AGAMOUS-like 16 (.1.2)		Potri.005G150501 [exp]	2.00	0.8727
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.017G134200 [exp]	2.64	0.8943
AT3G04945		LCR18	low-molecular-weight cysteine-...		Potri.013G032700 [exp]	5.47	0.8755
					Potri.002G075850 [exp]	7.48	0.8666
AT3G57230	MADS	AGL16	AGAMOUS-like 16 (.1.2)		Potri.002G109601 [exp]	16.79	0.8751
AT5G36130			Cytochrome P450 superfamily pr...		Potri.003G222001 [exp]	17.46	0.8181
AT4G35160			O-methyltransferase family pro...		Potri.009G139700 [exp]	17.74	0.8621
AT3G06130			Heavy metal transport/detoxifi...		Potri.005G036300 [exp]	18.65	0.8687
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Potri.016G023340 [exp]	20.78	0.8655
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Potri.003G201600 [exp]	21.54	0.8359

Compare expression of checked genes

Potri.017G053100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.