Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64230 244 / 1e-77 unknown protein AT3G19920 125 / 5e-32 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G073600 [exp] 55 / 4e-08 AT3G19920 119 / 9e-31 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033177 [exp] 334 / 6e-111 AT5G64230 296 / 2e-96 unknown protein Lus10010617 [exp] 327 / 6e-110 AT5G64230 294 / 3e-97 unknown protein Lus10017384 [exp] 134 / 6e-35 AT3G19920 327 / 8e-108 unknown protein Lus10010181 [exp] 131 / 6e-35 AT3G19920 311 / 5e-104 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.017G053200.1 pacid=42814019 polypeptide=Potri.017G053200.1.p locus=Potri.017G053200 ID=Potri.017G053200.1.v4.1 annot-version=v4.1 ATGGGCATGATGGAAACCTCTCCCATCACCATAGCTCCTATGCTAATAAGAAACATAGCAACCGCCATGTTTATCTTTGCTGATAAATCCCTTGTTGCCT TGGCCCAGAAGCACAAACTTCTTGAACATATTCGTTATCTTCTTGTCACTTCATTTCTCTTCTTTCTACGTTTACTTCCTTCTCTATTCCCTTCTTTAAG CCCTAGTTCTGATCTCCAAGATCATGATAATATTCAGTACCATCATCTTAAGCCACTCAAGACTGCAAACTACTTGCCTTCATCAGGTTATGGAGATTCA GGTATTGCTCGAGCACTCACACAGCTACTGTCAATCGTTAATGATATTCCGGTTAGCTCAAGAAAGTATGAAATAGTCAGATCATTAGCTGAGAAGGTTG TAGATGATAACCATGGAGAAAATAATGAGGCCTTACGTGAGGTCAACCGTGGGGTTTTATCAGCGGCTTTTTCAAGGACACTTAGCCAGCTTGAAGCCGC CATGATGGAGATAGCGCATGACGGGAGTGAAAATGGCGGCTCAAGGACTGGACCGGTTAAGCGTCGCTTGAACCAGATTTTAAAGGCTGCTAGGGCTGTT GGGGATGGGAGTTGGGCCCGGTCTGGTAGAGGTAGAGAAGGAGTGGACCGGTCCGAGGAGAAGTTGGCGGCTGAGCTGCTTTGGTTGGGTCAGAAATTGT CAGCTTGTGGATGTGGGGAGGAAGCTGTTCGGAGGTGGGCTTCGGCTTCAAACTTGGCTAGGCTTGCTCTCTCAGCAGAGGCTCGCCTACAAGGTTCGTT GGTGAAAGTCTCAGCCTTCCTGTTGAAACAAGCCAGAGAATTGGGACTTGATGAAGCAGGAGAAGGCCAGAGGGAGCCACAGCGACAAACAAAGATGAAG ATGCTATTGTCCTGGCTGCCATTGCTATGCAGAGCAAGCAATGGCACTGATGCACCTGTCCTCAGCATGAGGGAAAGGGCTGAGCTAGAGATAGTGTTGG AAGAGATGATAGACATGCTGGAGCACGAAGAAGAGCAGGAGCAGGTCTTGTCTTTGTGGCTGCACCACTTCACATATACTCCATCTTCTGACTGGCCTAA CCTCCGTGCCTCTTATGCTAGATGGTGCACTGCTTCTCGTCAGCTCTTACTTCTCAATTGA
AA sequence Show only first row Show all	>Potri.017G053200.1 pacid=42814019 polypeptide=Potri.017G053200.1.p locus=Potri.017G053200 ID=Potri.017G053200.1.v4.1 annot-version=v4.1 MGMMETSPITIAPMLIRNIATAMFIFADKSLVALAQKHKLLEHIRYLLVTSFLFFLRLLPSLFPSLSPSSDLQDHDNIQYHHLKPLKTANYLPSSGYGDS GIARALTQLLSIVNDIPVSSRKYEIVRSLAEKVVDDNHGENNEALREVNRGVLSAAFSRTLSQLEAAMMEIAHDGSENGGSRTGPVKRRLNQILKAARAV GDGSWARSGRGREGVDRSEEKLAAELLWLGQKLSACGCGEEAVRRWASASNLARLALSAEARLQGSLVKVSAFLLKQARELGLDEAGEGQREPQRQTKMK MLLSWLPLLCRASNGTDAPVLSMRERAELEIVLEEMIDMLEHEEEQEQVLSLWLHHFTYTPSSDWPNLRASYARWCTASRQLLLLN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G64230			unknown protein		Potri.017G053200 [exp]	0	1
AT2G17270		PHT3;3	phosphate transporter 3;3 (.1)		Potri.004G207200 [exp]	3.31	0.9380
AT4G27020			unknown protein		Potri.001G424500 [exp]	5.47	0.9187
AT3G19660			unknown protein		Potri.017G109900 [exp]	6.00	0.9213
AT1G14780			MAC/Perforin domain-containing...		Potri.008G136401 [exp]	7.48	0.9202
AT4G14450		ATBET12	unknown protein		Potri.010G073900 [exp]	8.12	0.9141	Pt-ATBET12.2
AT5G01540		LECRKA4.1	lectin receptor kinase a4.1 (....		Potri.016G123501 [exp]	8.30	0.9204
					Potri.003G087550 [exp]	11.48	0.8890
AT5G57150	bHLH	bHLH035	basic helix-loop-helix (bHLH) ...		Potri.018G141700 [exp]	12.12	0.8766
AT2G43840		UGT74F1	UDP-glycosyltransferase 74 F1 ...		Potri.007G140600 [exp]	12.24	0.8959
AT1G01980		ATSEC1A	FAD-binding Berberine family p...		Potri.011G158500 [exp]	13.19	0.8898

Compare expression of checked genes

Potri.017G053200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.