Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80570 699 / 0 RNI-like superfamily protein (.1.2.3) AT4G15475 80 / 8e-16 F-box/RNI-like superfamily protein (.1) AT5G23340 66 / 2e-11 RNI-like superfamily protein (.1) AT5G25350 64 / 1e-10 EBF2 EIN3-binding F box protein 2 (.1) AT5G27920 62 / 6e-10 F-box family protein (.1) AT2G25490 61 / 1e-09 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT5G01720 58 / 7e-09 RNI-like superfamily protein (.1) AT1G21410 54 / 1e-07 SKP2A F-box/RNI-like superfamily protein (.1) AT5G67250 50 / 3e-06 VFB4, SKIP2 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1) AT3G58530 48 / 8e-06 RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G128400 [exp] 74 / 7e-14 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.006G105400 [exp] 72 / 5e-13 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.013G013100 [exp] 67 / 2e-11 AT5G27920 631 / 0.0 F-box family protein (.1) Potri.005G088800 [exp] 62 / 3e-10 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1) Potri.006G254100 [exp] 62 / 6e-10 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1) Potri.018G027700 [exp] 61 / 9e-10 AT2G25490 820 / 0.0 EIN3-binding F box protein 1 (.1) Potri.019G123400 [exp] 58 / 9e-09 AT5G01720 604 / 0.0 RNI-like superfamily protein (.1) Potri.005G022600 [exp] 53 / 3e-07 AT5G27920 626 / 0.0 F-box family protein (.1) Potri.006G195800 [exp] 52 / 4e-07 AT3G58530 477 / 9e-170 RNI-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002665 [exp] 758 / 0 AT1G80570 662 / 0.0 RNI-like superfamily protein (.1.2.3) Lus10012722 [exp] 463 / 9e-164 AT1G80570 388 / 2e-134 RNI-like superfamily protein (.1.2.3) Lus10012721 [exp] 255 / 1e-83 AT1G80570 239 / 7e-78 RNI-like superfamily protein (.1.2.3) Lus10012764 [exp] 95 / 3e-20 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10002165 [exp] 77 / 9e-15 AT2G25490 684 / 0.0 EIN3-binding F box protein 1 (.1) Lus10030102 [exp] 71 / 6e-13 AT2G25490 683 / 0.0 EIN3-binding F box protein 1 (.1) Lus10002913 [exp] 68 / 7e-12 AT2G25490 760 / 0.0 EIN3-binding F box protein 1 (.1) Lus10002014 [exp] 66 / 2e-11 AT2G25490 766 / 0.0 EIN3-binding F box protein 1 (.1) Lus10041648 [exp] 64 / 1e-10 AT1G80630 478 / 2e-163 RNI-like superfamily protein (.1) Lus10001264 [exp] 63 / 2e-10 AT5G01720 781 / 0.0 RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.017G053400.1 pacid=42812999 polypeptide=Potri.017G053400.1.p locus=Potri.017G053400 ID=Potri.017G053400.1.v4.1 annot-version=v4.1 ATGGACGATTTGCCAGACCAATTGGTGTGGGATATCTTGAGCAGGGTCAAGAAAACTGTAGATAAAAACTCTGCTTCACTTGCATGTAAACGTATCTACG AACTGGATAATGAACAAAGACAATCTATGAGGGTTGGTTGTGGACTAGACCCTGCAAATCAAGCCCTGACATCGCTCTGCAATAGGTTTCCTAACTTGGC AAAAGTAGAAATAACATATTCTGGTTGGATGTCTAAGTTGGGAAAGCAATTAGATGACCAAGGGCTTGTCATTCTTGCCAATAATTGTCCTTCTCTGACT GATCTGACACTGAGCTACTGTACATTCATAACTGATGTAGGTCTTCGGCACTTGGCTTCTTGTTCCAAGCTTTCTGCCTTGAAGTTGAATTTCACTCCAA GAATCACTGGTTGTGGCATTTTATCTCTTGTTGTGGGCTGCAAGAATCTTACAATTCTTCACCTTATTCGATGTCTTAATGTTACCAGCGTTGAATGGCT TGAATACATTGGAAAGCTTGAAACACTGGAAGACCTTTCAATTAAGAATTGCAGAGCACTTGGTGAGGGTGATTTGATTAAGCTAGGATCTAGCTGGCGA AAACTAAAAAGGTTGCAGTTTGAGGTGGATGCTAATTACAGATATATGAAGGTTTATGATAGGCTAGCTGTTGATCGATGGCAAAAACAGTGGATCCCGT GTGAGTCCATGTTGGAGCTTAGCCTGGTGAATTGTATCATCAGTCCTGGGAGAGGGCTTGCTTGTATGTTGGGGAAGTGCAAGAACCTGGAGAAGATTCA TTTGGACATGTGTGTTGGAGTCAGAGATTGTGACATCATAGGCTTAGCTAAAAAATCAAGTAACCTTCGCTCAATTTCACTCCGAGTTCCTTCTGATTTC TCTCTGCCACTTCTGATGAACAATCCACTGAGATTAACAGATGAGAGTCTTAAAGCCCTAGCTCAGAACTGTTCAATGCTTGAATCTGTCCGGATATCTT TTTCTGATGGGGAATTTCCTTCCTTTTCATCATTTACACAAAACGGAATCCTTAATTTGATTCAGATGTGCCCAATTCGGGAACTTGCTCTTGACCATGT GTATTCCTTCAATGACGTTGGTATGGAAGCTCTTTGTTCAGCTCACTATCTTGAAACCTTAGAGCTTGTCAGATGCCAAGAAATCAGTGACGAGGGGCTA CAGCTTGTGGGGCAGTTTCCTCGTCTGTGCATTTTACGATTAAAAAAATGTTTAGGGGTTACTGATGATGGATTGTACCCTCTTGCTGGGACAGACAAAT TGGATTTCTTAGCTGTTGAAGATTGCCCTCAAATTTCTGAAAGGGGCGTTCAAGGAGCTGCAAGATCCGTGTCATTCCGGCAAGACTTATCATGGATGTA TTGA
AA sequence Show only first row Show all	>Potri.017G053400.1 pacid=42812999 polypeptide=Potri.017G053400.1.p locus=Potri.017G053400 ID=Potri.017G053400.1.v4.1 annot-version=v4.1 MDDLPDQLVWDILSRVKKTVDKNSASLACKRIYELDNEQRQSMRVGCGLDPANQALTSLCNRFPNLAKVEITYSGWMSKLGKQLDDQGLVILANNCPSLT DLTLSYCTFITDVGLRHLASCSKLSALKLNFTPRITGCGILSLVVGCKNLTILHLIRCLNVTSVEWLEYIGKLETLEDLSIKNCRALGEGDLIKLGSSWR KLKRLQFEVDANYRYMKVYDRLAVDRWQKQWIPCESMLELSLVNCIISPGRGLACMLGKCKNLEKIHLDMCVGVRDCDIIGLAKKSSNLRSISLRVPSDF SLPLLMNNPLRLTDESLKALAQNCSMLESVRISFSDGEFPSFSSFTQNGILNLIQMCPIRELALDHVYSFNDVGMEALCSAHYLETLELVRCQEISDEGL QLVGQFPRLCILRLKKCLGVTDDGLYPLAGTDKLDFLAVEDCPQISERGVQGAARSVSFRQDLSWMY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G80570			RNI-like superfamily protein (...		Potri.017G053400 [exp]	0	1
AT3G09970			Calcineurin-like metallo-phosp...		Potri.002G156500 [exp]	1.00	0.8742
AT4G19860			alpha/beta-Hydrolases superfam...		Potri.015G121000 [exp]	1.73	0.8489
AT5G57900		SKIP1	SKP1 interacting partner 1 (.1...		Potri.018G104900 [exp]	4.00	0.8268	Pt-SKIP1.1
AT4G31750		WIN2	HOPW1-1-interacting 2 (.1)		Potri.018G013900 [exp]	9.27	0.8631
AT2G02040		NTR1, ATPTR2-B	NITRATE TRANSPORTER 1, ARABIDO...		Potri.010G100200 [exp]	19.79	0.7384	NTR1.3
AT2G10950			BSD domain-containing protein ...		Potri.006G065200 [exp]	22.00	0.7919
AT2G38820			Protein of unknown function (D...		Potri.005G058200 [exp]	24.37	0.7677
AT4G05050		UBQ11	ubiquitin 11 (.1.2.3.4)		Potri.011G026600 [exp]	25.61	0.7807	Pt-SUBI.7
AT5G45290			RING/U-box superfamily protein...		Potri.018G114700 [exp]	26.83	0.7631
AT2G21620		RD2	Adenine nucleotide alpha hydro...		Potri.009G117500 [exp]	31.43	0.8037	RD2.1

Compare expression of checked genes

Potri.017G053400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.