Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80600 677 / 0 WIN1 HOPW1-1-interacting 1 (.1) AT5G46180 198 / 4e-58 DELTA-OAT ornithine-delta-aminotransferase (.1) AT4G39660 187 / 7e-54 AGT2 alanine:glyoxylate aminotransferase 2 (.1) AT2G38400 187 / 9e-54 AGT3 alanine:glyoxylate aminotransferase 3 (.1.2) AT3G08860 174 / 4e-49 PYD4 PYRIMIDINE 4 (.1) AT3G22200 161 / 5e-44 HER1, GABA-T, POP2 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) AT3G48730 135 / 5e-35 GSA2 glutamate-1-semialdehyde 2,1-aminomutase 2 (.1) AT5G63570 132 / 1e-33 GSA1 "glutamate-1-semialdehyde-2,1-aminomutase", glutamate-1-semialdehyde-2,1-aminomutase (.1) AT5G57590 84 / 7e-17 BIO1 biotin auxotroph 1, adenosylmethionine-8-amino-7-oxononanoate transaminases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G095800 [exp] 681 / 0 AT1G80600 636 / 0.0 HOPW1-1-interacting 1 (.1) Potri.011G082800 [exp] 201 / 3e-59 AT5G46180 734 / 0.0 ornithine-delta-aminotransferase (.1) Potri.016G132200 [exp] 189 / 8e-55 AT2G38400 769 / 0.0 alanine:glyoxylate aminotransferase 3 (.1.2) Potri.006G106800 [exp] 184 / 1e-52 AT3G08860 771 / 0.0 PYRIMIDINE 4 (.1) Potri.007G085600 [exp] 174 / 7e-49 AT4G39660 814 / 0.0 alanine:glyoxylate aminotransferase 2 (.1) Potri.006G020900 [exp] 155 / 6e-42 AT3G22200 834 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Potri.016G018500 [exp] 153 / 3e-41 AT3G22200 826 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Potri.015G101100 [exp] 115 / 1e-27 AT3G48730 749 / 0.0 glutamate-1-semialdehyde 2,1-aminomutase 2 (.1) Potri.005G082100 [exp] 79 / 9e-17 AT4G39660 219 / 1e-69 alanine:glyoxylate aminotransferase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008025 [exp] 638 / 0 AT1G80600 614 / 0.0 HOPW1-1-interacting 1 (.1) Lus10031196 [exp] 621 / 0 AT1G80600 606 / 0.0 HOPW1-1-interacting 1 (.1) Lus10025262 [exp] 206 / 7e-61 AT3G08860 722 / 0.0 PYRIMIDINE 4 (.1) Lus10023299 [exp] 204 / 2e-60 AT5G46180 743 / 0.0 ornithine-delta-aminotransferase (.1) Lus10038510 [exp] 204 / 3e-60 AT5G46180 741 / 0.0 ornithine-delta-aminotransferase (.1) Lus10031775 [exp] 191 / 4e-59 AT1G80600 195 / 3e-61 HOPW1-1-interacting 1 (.1) Lus10029922 [exp] 179 / 8e-51 AT4G39660 801 / 0.0 alanine:glyoxylate aminotransferase 2 (.1) Lus10004480 [exp] 176 / 1e-49 AT4G39660 801 / 0.0 alanine:glyoxylate aminotransferase 2 (.1) Lus10009086 [exp] 164 / 9e-46 AT3G08860 625 / 0.0 PYRIMIDINE 4 (.1) Lus10010465 [exp] 153 / 4e-41 AT3G22200 756 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [poplar] [flax] PLP_aminotran PF00202 [poplar] [flax] Aminotran_3 Aminotransferase class-III
Representative CDS sequence Show only first row Show all	>Potri.017G053500.1 pacid=42813439 polypeptide=Potri.017G053500.1.p locus=Potri.017G053500 ID=Potri.017G053500.1.v4.1 annot-version=v4.1 ATGGGTTCTCTCCAGCACTTCCTCAACAGTCCGATCTCGGTCCCCTTTTCTCCAAATCTCAATCATCGCCGTTCTTTTTTCTTACGAGCATGCCTTAACC TGGACGTGCATGCACCGGATTCAGTGAAACCCAAAACCCATTTGAAAAGTCGAGAGGTTATGGAGATGGAAGGGAAGGTGTTAGTTGGGACATATGCAAG AAACCCAGTTGTGATTTCGAGTGGAAAAGGTTGTAAATTGTATGATCCCGAAGGGAGAGAGTACTTGGATTGTACTTCTGGTATTGCTGTTAATGCTCTT GGTCATGGGGATCCTGATTGGGTCAAAGCTGTTGTTGAGCAAGCTAATTTGCTCACTCATGTCAGCAATGTTTTCTATTCAGTTCCTCAGGTAGAGCTTG CTAGACGTCTTGTGGCTTGTTCATTTGCCGATCGTGTATTTTTCACGAACTCTGGTACGGAAGCAAATGAAGCTGCTATAAAGTTTGCACGGAAGTATCA ACGATTTACAAATCCTGATGAGAAGCAGCAAGTGACAGAGTTTATTTCATTTAGTAATAGCTTCCATGGGAGGACAATGGGGGCTCTGGCATTGACAAGC AAGGAGCAGTATCGATTTCCTTTTGAGCCTGTCATGCCTGGAGTTAATTTCCTGGAATATGGTGACGTACAGGCTGCAACAGAACTGATTAAGTCTGGCA GGATTGCTGCTGTATTTGTAGAACCAATACAGGGTGAAGGTGGTATTTATAGTGCAACAAAGGAATTCTTACAGTCCTTACGTAGTGCTTGTGATGATGC TGGGTCTCTCCTGGTTTTTGACGAGGTCCAATGTGGCTTAGGTCGAACTGGTTATCTTTGGGCACACGAGGCATATGGTGTGGTCCCAGATATAATGACA CTTGCCAAGCCTCTCGCAGGAGGTCTACCTATAGGAGCTGCATTGGTGAGTGAAAAAGTTGCAGCTGCCATAAAATATGGAGACCACGGGAGCACTTTTG CTGGTGGGCCTCTTGTCTGTAACGCTGCCATTGCTGTTTTAGATAAAATATCAAAGCCAGGTTTCTTGGCCAGTGTCTCTGAGAAAGGTCAATACTTCAA AGAACTTTTAATTCACAAACTAGGAGGAAATTCACATGTGAGAGAAGTACGAGGTTTGGGACTTATAATTGGGATAGAGCTGGATGTATCCGCTTCACCC CTCGTAGATGCCTGCCGAGATTCCAGTCTTCTAATATTAACTGCTGGAAAAGGAAATGTTGTCAGGCTGGTCCCCCCGTTGATCATCTCAGAACAAGAAC TGGAGCGTGCTGCTGAGATTATACTGGAATGTCTTCCAGCACTTGACAAGACTAGTTGA
AA sequence Show only first row Show all	>Potri.017G053500.1 pacid=42813439 polypeptide=Potri.017G053500.1.p locus=Potri.017G053500 ID=Potri.017G053500.1.v4.1 annot-version=v4.1 MGSLQHFLNSPISVPFSPNLNHRRSFFLRACLNLDVHAPDSVKPKTHLKSREVMEMEGKVLVGTYARNPVVISSGKGCKLYDPEGREYLDCTSGIAVNAL GHGDPDWVKAVVEQANLLTHVSNVFYSVPQVELARRLVACSFADRVFFTNSGTEANEAAIKFARKYQRFTNPDEKQQVTEFISFSNSFHGRTMGALALTS KEQYRFPFEPVMPGVNFLEYGDVQAATELIKSGRIAAVFVEPIQGEGGIYSATKEFLQSLRSACDDAGSLLVFDEVQCGLGRTGYLWAHEAYGVVPDIMT LAKPLAGGLPIGAALVSEKVAAAIKYGDHGSTFAGGPLVCNAAIAVLDKISKPGFLASVSEKGQYFKELLIHKLGGNSHVREVRGLGLIIGIELDVSASP LVDACRDSSLLILTAGKGNVVRLVPPLIISEQELERAAEIILECLPALDKTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G80600		WIN1	HOPW1-1-interacting 1 (.1)		Potri.017G053500 [exp]	0	1
AT1G78590		NADK3, ATNADK-3	ARABIDOPSIS THALIANA NADH KINA...		Potri.011G104400 [exp]	4.12	0.7917
AT1G62390		CLMP1, Phox2	Phox2, CLUMPED CHLOROPLASTS 1,...		Potri.011G021000 [exp]	7.74	0.7672
AT5G63980		SUPO1, RON1, AL...	suppressors of PIN1 overexpres...		Potri.007G105100 [exp]	10.95	0.7528
					Potri.016G007450 [exp]	12.64	0.7231
AT4G16060			unknown protein		Potri.010G006000 [exp]	20.49	0.7178
AT5G01340		AtmSFC1	mitochondrial succinate-fumara...		Potri.016G119500 [exp]	21.21	0.7048
AT1G03650			Acyl-CoA N-acyltransferases (N...		Potri.013G134102 [exp]	25.49	0.6885
AT4G16515		RGF6	root meristem growth factor 6,...		Potri.007G077300 [exp]	26.72	0.6959
					Potri.019G108050 [exp]	30.33	0.7220
AT2G29260			NAD(P)-binding Rossmann-fold s...		Potri.001G244900 [exp]	30.57	0.7193

Compare expression of checked genes

Potri.017G053500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.