Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69800 370 / 4e-125 Cystathionine beta-synthase (CBS) protein (.1), Cystathionine beta-synthase (CBS) protein (.2) AT3G48530 179 / 2e-51 KING1 SNF1-related protein kinase regulatory subunit gamma 1 (.1) AT1G80090 51 / 1e-06 AtPV42b Cystathionine beta-synthase (CBS) family protein (.1) AT1G15330 44 / 0.0002 AtPV42a Cystathionine beta-synthase (CBS) protein (.1) AT5G10860 41 / 0.0007 CBSX3 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G094700 [exp] 182 / 2e-52 AT3G48530 627 / 0.0 SNF1-related protein kinase regulatory subunit gamma 1 (.1) Potri.012G097000 [exp] 181 / 5e-52 AT3G48530 572 / 0.0 SNF1-related protein kinase regulatory subunit gamma 1 (.1) Potri.009G118700 [exp] 97 / 1e-21 AT3G48530 111 / 9e-27 SNF1-related protein kinase regulatory subunit gamma 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013265 [exp] 394 / 2e-134 AT1G69800 536 / 0.0 Cystathionine beta-synthase (CBS) protein (.1), Cystathionine beta-synthase (CBS) protein (.2) Lus10030788 [exp] 347 / 3e-116 AT1G69800 491 / 4e-173 Cystathionine beta-synthase (CBS) protein (.1), Cystathionine beta-synthase (CBS) protein (.2) Lus10022458 [exp] 192 / 4e-56 AT3G48530 579 / 0.0 SNF1-related protein kinase regulatory subunit gamma 1 (.1) Lus10016763 [exp] 190 / 2e-55 AT3G48530 578 / 0.0 SNF1-related protein kinase regulatory subunit gamma 1 (.1) Lus10042308 [exp] 77 / 6e-15 AT3G48530 125 / 1e-31 SNF1-related protein kinase regulatory subunit gamma 1 (.1) Lus10026352 [exp] 71 / 8e-13 AT3G48530 127 / 4e-32 SNF1-related protein kinase regulatory subunit gamma 1 (.1) Lus10019117 [exp] 42 / 0.0003 AT5G10860 347 / 2e-123 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [poplar] [flax] CBS CBS domain
Representative CDS sequence Show only first row Show all	>Potri.017G053600.2 pacid=42813638 polypeptide=Potri.017G053600.2.p locus=Potri.017G053600 ID=Potri.017G053600.2.v4.1 annot-version=v4.1 ATGGCAGGAAAACAACAGGTTACAAAAAGTTCAGAACTTTCAATCTGTGATTCATATTTTGAGAACATACAGTCCAGAAAGAAGTTGCCGTTTTCATTAC AGGAGACCTTAACTGCTGCATTTGCAGAGATTCCAGCTTCATCATTCCCACCAGTTCCAGGTGGCAAAGTCATTGAAATTTTAGCGGATTCGTCGGTTGC TGATGCTGTTAGAATTTTATCTGAATGCAACATTATGGCTGCCCCTGTAAAAAAAGTAGATGCTGGGGACAGTTTGGATTGGAGAGATAGGTACCTCGGA ATCATAGATTACTCAGCAATTGTCCTCTGGGTATTAGAGAGTGCTGAGCTCGCGGCTGTTGCTTTAGCAGCCACTTCTGCAGCAGCTGCTGGCATAGGTA CTGGAGCTGTCGGTGCTCTTGGAGCAGTAGCATTGGGTTTAACAGGTCCTGTTGCGGTTGCTGGGCTAACTGCTGCTGCAGTAGGTGCTGCTGTAGTTGG TGGTGTTGCTGCAGAAAAAGGAGCTGGAAAAGACGCCTCGACAGCTGCTGACAACTTGGGGCAGGATTTCTACAAAGTTCTTCTTCAAGAAGAACCCTTC AAGTCAACCACTGTGGGATCGATTATTACTTCATACCGCTGGTCTCCTTTTCTTCCAGTCACAACAAACAGTTCAATGTTGAGCATCTTACTTCTACTTT CAAAATATCGGCTGCGAAATGTACCTGTGATCGAGCCAGGGAAACCTGATATTCAGAACTTCATAACTCAATCTGCAATTGTTCAAGGTCTGGAGGGATG CAAGGGAAGAGACTGGTTTGATTGCATTGCTGCACAACCTATTTCAAATGTAGGCCTTCCTTTTGTGTCTGCTAACGAGGTTGTTAGTGTCCAGAGTGGT GAACTGATCTTGGAAGCTTTCAAGAAAATGAAAGATAACAAAATTGGTGGTCTTCCTGTAGTAGAGGGACCGAATAAGAAGATTATTGGAAATCTCAGCA TACGGGACATCAGACACTTGCTGCTCAAGCCTGAGCTTTTCTCCAATTTCAGGCAGCATACCGTTATGGATTTCATGAACGCCATCGTCTCAACAACCAA AGGAACAGGAAGCGTCATCCCACCAATTACCTGCAAGCCTGATGCAACTCTTGGTAGCTTGATCCATGCTCTTTCTTCCAGGTCAGGTCACAGGATTCAT GTGGTTAACCAATCTGAAGAAGTTGTGGGCGTGATTACGCTCAGAGATGTGATCTCTTGTTTCGTGTACGAGCCCCCGAACCATTTCGATAGCTACTTTT CTTTTTCAACTAAAGAAATGCTGGATGAGTGA
AA sequence Show only first row Show all	>Potri.017G053600.2 pacid=42813638 polypeptide=Potri.017G053600.2.p locus=Potri.017G053600 ID=Potri.017G053600.2.v4.1 annot-version=v4.1 MAGKQQVTKSSELSICDSYFENIQSRKKLPFSLQETLTAAFAEIPASSFPPVPGGKVIEILADSSVADAVRILSECNIMAAPVKKVDAGDSLDWRDRYLG IIDYSAIVLWVLESAELAAVALAATSAAAAGIGTGAVGALGAVALGLTGPVAVAGLTAAAVGAAVVGGVAAEKGAGKDASTAADNLGQDFYKVLLQEEPF KSTTVGSIITSYRWSPFLPVTTNSSMLSILLLLSKYRLRNVPVIEPGKPDIQNFITQSAIVQGLEGCKGRDWFDCIAAQPISNVGLPFVSANEVVSVQSG ELILEAFKKMKDNKIGGLPVVEGPNKKIIGNLSIRDIRHLLLKPELFSNFRQHTVMDFMNAIVSTTKGTGSVIPPITCKPDATLGSLIHALSSRSGHRIH VVNQSEEVVGVITLRDVISCFVYEPPNHFDSYFSFSTKEMLDE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G69800			Cystathionine beta-synthase (C...		Potri.017G053600 [exp]	0	1
AT1G28270		RALFL4	ralf-like 4 (.1)		Potri.004G045000 [exp]	2.44	0.8828
AT4G39070	CO		B-box zinc finger family prote...		Potri.009G122000 [exp]	3.46	0.8741
AT4G27290			S-locus lectin protein kinase ...		Potri.011G126151 [exp]	3.74	0.8424
AT4G22290			Ubiquitin-specific protease fa...		Potri.002G176200 [exp]	4.47	0.8760
AT1G28270		RALFL4	ralf-like 4 (.1)		Potri.004G044900 [exp]	5.74	0.8476
AT4G30420			nodulin MtN21 /EamA-like trans...		Potri.006G177700 [exp]	5.91	0.8744
AT1G51550			Kelch repeat-containing F-box ...		Potri.008G006300 [exp]	6.48	0.8728
					Potri.014G182232 [exp]	9.00	0.8534
AT1G26320			Zinc-binding dehydrogenase fam...		Potri.017G003950 [exp]	10.39	0.8182
					Potri.006G143901 [exp]	11.22	0.8349

Compare expression of checked genes

Potri.017G053600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.