Plant FIBer expression Database

Potri.017G053900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G80610 89 / 2e-21 unknown protein
AT1G15800 86 / 3e-20 unknown protein
AT4G32030 60 / 2e-10 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G313900
[exp]
328 / 8e-114 AT1G80610 / unknown protein
Potri.006G259700
[exp]
96 / 3e-23 AT4G32030 104 / 9e-27 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001935
[exp]
79 / 1e-17 AT4G32030 80 / 5e-18 unknown protein
PFAM info
Representative CDS sequence
>Potri.017G053900.1 pacid=42812985 polypeptide=Potri.017G053900.1.p locus=Potri.017G053900 ID=Potri.017G053900.1.v4.1 annot-version=v4.1
ATGACCGTAGAGGACGAGTGGGTTCAAGTAGCTATGACCGATGACAGTTTGGTGGTGGAGCTACTTTTAAAGCTGAACCAGCCAGAGCCACTCCCTGCAC
CACGTCGACGACGTCATTTTCCGCCGGATTTGGTTAAGGAAGGAGCCGTTCTGGCTTTGAGTGTGGACTGGAGCGTTAGACAACGACGCTCTTCTTCTAA
GCATGTATTGATGACCAGGAGGAAAAAGGGTTCTGATTCCTCGGCTCATGCTAGTCCTACCACTCCGCTTTCTTTTAGCTGTGCCACCTCCGTCAGCGGT
GGTGGCGACGGTTTTGATGAAGCTACCACTAGTCTTCCCTCTAAGTTGTTTGCCACCTCGAGATCTAAGGTTGCCGTTACAAGTGAAACGCCAACCACCA
AGAGGTCAAGAAAGAAGAAGAATTTAGTTCAGCTTAGAGAGGAGGAGGGTTTGCTATTGAAGGAAAGAAGAAGTTTGAAAAACAAATTGGCAACCTTACG
TGTGACTGTAGAGAAAGAGAGAGCCACAAATGAAAGATTGAAGAGAATGAAGCTTGATTTTCTATCACAGCAAAGACCGGAGGTACTTCCAGCTGCTGTT
AAATCAGAAGATGATATTTCAATCCAGCCTCAGGAAACAAAAGTAGCCTGTGATTCCACATATTCAATGTTGCCACACAATGTTTCTTTCCCATTACAGG
AGGATGAAGGCACGAAGCCTTCCTTTCTGCTACCTGACCTGAATCTCCCTGTTGAAGGCGATTCAGGCTCTGGTGTTTTGAGCTGA
AA sequence
>Potri.017G053900.1 pacid=42812985 polypeptide=Potri.017G053900.1.p locus=Potri.017G053900 ID=Potri.017G053900.1.v4.1 annot-version=v4.1
MTVEDEWVQVAMTDDSLVVELLLKLNQPEPLPAPRRRRHFPPDLVKEGAVLALSVDWSVRQRRSSSKHVLMTRRKKGSDSSAHASPTTPLSFSCATSVSG
GGDGFDEATTSLPSKLFATSRSKVAVTSETPTTKRSRKKKNLVQLREEEGLLLKERRSLKNKLATLRVTVEKERATNERLKRMKLDFLSQQRPEVLPAAV
KSEDDISIQPQETKVACDSTYSMLPHNVSFPLQEDEGTKPSFLLPDLNLPVEGDSGSGVLS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G80610 unknown protein Potri.017G053900
[exp]
0 1
AT5G13250 RING finger protein (.1) Potri.001G062700
[exp]
3.74 0.7131
AT1G80650 RTL1 RNAse THREE-like protein 1 (.1... Potri.003G179700
[exp]
3.87 0.7004
AT4G32010 B3 HSL1, HSI2-L1, ... VP1/ABI3-LIKE 2, HSI2-like 1 (... Potri.016G136500
[exp]
12.28 0.7297
AT1G68670 GARP myb-like transcription factor ... Potri.008G117500
[exp]
15.49 0.6530
AT2G02370 SNARE associated Golgi protein... Potri.003G151800
[exp]
16.49 0.6097
AT5G24360 AtIRE1b, ATIRE1... ARABIDOPSIS THALIANA INOSITOL ... Potri.005G254000
[exp]
30.51 0.6275
AT5G11070 unknown protein Potri.003G070750
[exp]
30.85 0.6972
AT1G50640 AP2_ERF ATERF3 ethylene responsive element bi... Potri.005G219600
[exp]
37.32 0.6664
AT4G16380 Heavy metal transport/detoxifi... Potri.016G006700
[exp]
37.94 0.6402
AT1G07380 Neutral/alkaline non-lysosomal... Potri.016G110000
[exp]
38.17 0.6130

Potri.017G053900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.