Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48820 127 / 3e-36 ICK6, KRP3 KIP-RELATED PROTEIN 3, inhibitor/interactor with cyclin-dependent kinase (.1.2) AT2G32710 114 / 1e-30 ICK7, ACK2, KRP4 KIP-RELATED PROTEIN 4, INTERACTORS OF CDC2 KINASE 7, CYCLIN-DEPENDENT KINASE INHIBITOR 2, Cyclin-dependent kinase inhibitor family protein (.1.2) AT3G24810 70 / 1e-14 ICK3, KRP5 kip-related protein 5, Cyclin-dependent kinase inhibitor family protein (.1) AT1G49620 61 / 3e-11 ICN6, ICK5, KRP7 KIP-RELATED PROTEIN 7, Cyclin-dependent kinase inhibitor family protein (.1) AT3G19150 58 / 3e-10 ACK1, ICK4, KRP6 ARABIDOPSIS CDK INHIBITOR 1, KIP-related protein 6 (.1.2) AT3G50630 52 / 4e-08 ICK2, KRP2 KIP-related protein 2 (.1) AT2G23430 47 / 2e-06 ICK1, KRP1 KIP-RELATED PROTEIN 1, Cyclin-dependent kinase inhibitor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G314000 [exp] 289 / 3e-99 AT5G48820 131 / 2e-37 KIP-RELATED PROTEIN 3, inhibitor/interactor with cyclin-dependent kinase (.1.2) Potri.002G242100 [exp] 145 / 6e-43 AT5G48820 177 / 6e-56 KIP-RELATED PROTEIN 3, inhibitor/interactor with cyclin-dependent kinase (.1.2) Potri.009G103600 [exp] 67 / 2e-13 AT1G49620 92 / 6e-23 KIP-RELATED PROTEIN 7, Cyclin-dependent kinase inhibitor family protein (.1) Potri.004G142100 [exp] 62 / 2e-11 AT1G49620 91 / 7e-23 KIP-RELATED PROTEIN 7, Cyclin-dependent kinase inhibitor family protein (.1) Potri.005G137500 [exp] 51 / 1e-07 AT3G19150 50 / 2e-07 ARABIDOPSIS CDK INHIBITOR 1, KIP-related protein 6 (.1.2) Potri.007G042300 [exp] 50 / 4e-07 AT2G23430 / KIP-RELATED PROTEIN 1, Cyclin-dependent kinase inhibitor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043139 [exp] 182 / 7e-57 AT2G32710 143 / 2e-41 KIP-RELATED PROTEIN 4, INTERACTORS OF CDC2 KINASE 7, CYCLIN-DEPENDENT KINASE INHIBITOR 2, Cyclin-dependent kinase inhibitor family protein (.1.2) Lus10032611 [exp] 164 / 7e-50 AT2G32710 139 / 1e-39 KIP-RELATED PROTEIN 4, INTERACTORS OF CDC2 KINASE 7, CYCLIN-DEPENDENT KINASE INHIBITOR 2, Cyclin-dependent kinase inhibitor family protein (.1.2) Lus10011862 [exp] 109 / 6e-29 AT5G48820 146 / 2e-43 KIP-RELATED PROTEIN 3, inhibitor/interactor with cyclin-dependent kinase (.1.2) Lus10022796 [exp] 84 / 4e-19 AT5G48820 94 / 4e-23 KIP-RELATED PROTEIN 3, inhibitor/interactor with cyclin-dependent kinase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02234 [poplar] [flax] CDI Cyclin-dependent kinase inhibitor
Representative CDS sequence Show only first row Show all	>Potri.017G054000.1 pacid=42813849 polypeptide=Potri.017G054000.1.p locus=Potri.017G054000 ID=Potri.017G054000.1.v4.1 annot-version=v4.1 ATGGGCAAGTATATGAGGAAGGCTAAAACGACAAATGATTTAACCGTGGTCGACTTGAGTTGTGGTGTCCGTACCCGAGCCAAAACCCTAGCTCTCAAGA AACAACAAGCCCTCAGATTGCATGCTTCCTCTGCCTCTCCTCCTCCCCCCTCGTCTCCCGCCGGCTACCTCCAGCTTCGCAGCCGCCGTCTTGAGAAGAA ACCACCTCCAGTTCCATCATTGCATCATGGCTCCCCGCGAAGGCAGCAGCAGAGACTGGGTGGTCAGAACAATAACAAATTGGGGCAGCAAGAAAGCCCT AGCCCTATTTTGAAACCGAGTTCGCGGGTGGATAAAGATTCCGGGTCGAGTCAAGAGAGAGAAGGGGGGGAGAGTAAAGAGGTTGAAGAGAATAATAACA GCAATAGTAAAGACTTGGGTTCTTTTGGAGATAATGTTTTGGACATTGAAAGTAGAGATAGGAGCACTAGGGAATCCACTCCTTGCAATTTAACAAGAGG CACAGAAGACACAAGAACCCCTGGTTCTACTACTAAGCCTGCTAGCCCAACTGAAAGTAGCCGGAGATTACAGAACTCAATGCAAAGACGCATCCCAACA ACCCGTGAAATGGATGAGTTCTTTGGCCCAGCTGAAGAAGAGCAGCTAAGGCAATTTACTGAGAAGTATAACTTTGACCCTGTTAGTGACAAGCCGCTCC CTGGACGTTATGAATGGGAGAAATTGGATCCCTAG
AA sequence Show only first row Show all	>Potri.017G054000.1 pacid=42813849 polypeptide=Potri.017G054000.1.p locus=Potri.017G054000 ID=Potri.017G054000.1.v4.1 annot-version=v4.1 MGKYMRKAKTTNDLTVVDLSCGVRTRAKTLALKKQQALRLHASSASPPPPSSPAGYLQLRSRRLEKKPPPVPSLHHGSPRRQQQRLGGQNNNKLGQQESP SPILKPSSRVDKDSGSSQEREGGESKEVEENNNSNSKDLGSFGDNVLDIESRDRSTRESTPCNLTRGTEDTRTPGSTTKPASPTESSRRLQNSMQRRIPT TREMDEFFGPAEEEQLRQFTEKYNFDPVSDKPLPGRYEWEKLDP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G48820		ICK6, KRP3	KIP-RELATED PROTEIN 3, inhibit...		Potri.017G054000 [exp]	0	1
AT4G34500			Protein kinase superfamily pro...		Potri.009G115600 [exp]	2.00	0.7621
AT1G13940			Plant protein of unknown funct...		Potri.008G092800 [exp]	3.00	0.7431
AT4G10380		AtNIP5;1, NIP5;...	NOD26-LIKE MIP 8, NOD26-LIKE M...		Potri.001G455000 [exp]	7.61	0.6889
AT2G28110		IRX7, FRA8	IRREGULAR XYLEM 7, FRAGILE FIB...		Potri.009G006500 [exp]	8.42	0.7663
AT4G32760			ENTH/VHS/GAT family protein (....		Potri.018G039100 [exp]	11.40	0.7249
AT2G24240			BTB/POZ domain with WD40/YVTN ...		Potri.018G107600 [exp]	12.80	0.7390
AT5G25280			serine-rich protein-related (....		Potri.006G258600 [exp]	16.24	0.7242
AT3G15470			Transducin/WD40 repeat-like su...		Potri.011G122500 [exp]	16.97	0.7100
AT4G38040			Exostosin family protein (.1)		Potri.008G060500 [exp]	20.83	0.6882
AT3G56590			hydroxyproline-rich glycoprote...		Potri.016G029100 [exp]	21.16	0.7359

Compare expression of checked genes

Potri.017G054000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.