Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32730 1642 / 0 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit (.1) AT1G04810 1591 / 0 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G314300 [exp] 1862 / 0 AT2G32730 1617 / 0.0 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit (.1) Potri.004G183750 [exp] 259 / 4e-79 AT2G32730 265 / 9e-82 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit (.1) Potri.017G014800 [exp] 44 / 0.0005 AT2G20580 1399 / 0.0 26S proteasome regulatory subunit S2 1A (.1) Potri.004G183675 [exp] 0 / 1 AT2G32730 105 / 1e-26 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007140 [exp] 1646 / 0 AT2G32730 1672 / 0.0 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit (.1) Lus10016681 [exp] 1559 / 0 AT2G32730 1602 / 0.0 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01851 [poplar] [flax] PC_rep Proteasome/cyclosome repeat CL0020 [poplar] [flax] TPR PF13646 [poplar] [flax] HEAT_2 HEAT repeats
Representative CDS sequence Show only first row Show all	>Potri.017G054400.3 pacid=42814300 polypeptide=Potri.017G054400.3.p locus=Potri.017G054400 ID=Potri.017G054400.3.v4.1 annot-version=v4.1 ATGCCGGAAACTATGGTTAGCTCTGCGGGTGGACTGCTGGCTATGCTTAATGAGAGCCACCCTTTGTTAAAACAACACGCTCTCTACAATCTCAATAACT TTGTCGATCAATTTTGGCCGGAGATCTCTACTAGCGTGCCTATAATAGAGAGCTTGTATGAAGATGATGAGTTTGATCTGCATCAGAGGCAACTTGCCGC ATTGCTTGTTTCTAAGGTTTTCTATTACTTGGGTGAACTTAATGACTCACTGTCGTATGCCCTTGGAGCTGGATCCCTCTTTGATGTTTCAGAGGATTCT GACTATGTTCATACTCTTCTTGCTAAGGCTATTGATGAGTATGCTAGCCTAAAGTCCAAGGCAGCTGAATCAAATTCTGATGGAGCTGATGTGGACCCTA GGCTGGAAGCAATTGTGGAGAGATTGCTAGACAAGTGCATCATGGATGGAAAGTACCAGCAAGCTATGGGAATTGCAATTGAATGCCGAAGATTAGATAA ACTTGAGGAAGCTATCATGAAGAGTGATAATGTCCATGGAACTCTGTCCTATTGTATTAATGTTTCCCATTCATTCGTTAATCGCAGAGAGTATCGGCTT GAGGTCCTCCAGCTTCTTGTTAATGTATATCAAAAGCTGCCTTCTCCTGATTATTTGAGCATTTGTCAGTGTTTGATGTTCTTGGATGAGCCTGAAGGTG TAGCTAGCATATTGGAAAAACTTCTACGCTCAGGAAACAAGGATGAAGCTCTGTTGGCATTTCAAATAGCTTTTGATCTTGTGGAGAATGAGCATCAGGC TTTTCTTTTAAATGTTAGAAACCGCCTTCCACCTCCAAAGTCTCAAATTTCAGAGCCAGAACAGCCAAAATCCTTGGTTCCAGATTCATCTCAAAATGAA AATTCTAGTGCTCCAGAAGATGTTCAAATGACAGAAGGAACCTCATCTTCTACCGTGCATGAACCAGATCCAAGTGAAGTAGTGTATGCTGAGAGGCTGA CAAAAATCAAGGGAATTTTGTCAGGAGAGATGTCAATACAGCTGACTTTGCAATTCCTATACAGTCATAATAAGTCCGACCTCCTTATATTGAAGACAAT CAAGCAGTCTGTTGAGATGAGAAACAGTGTCTGTCATAGTGCAACTATTTATGCTAATGCAATTATGCATGCTGGAACAACTGTGGATACATTTCTCAGA GAAAATCTAGACTGGTTAAGCAGGGCGACAAATTGGGCCAAATTTAGTGCAACAGCAGGTCTTGGTGTCATCCACAGAGGTCACTTGCAGCAGGGCAGGT CACTGATGGCCCCTTACTTGCCTCAAGGTGGTGCTGGTGCTGGTGGTGGAGGTAGTCCATACTCAGAAGGTGGCGCTCTCTATGCTTTGGGACTCATTCA TGCCAACCATGGCGAGGGCATAAAACAATTCCTTCGTGAAAGCATACGTAGCACCAGTGTGGAGGTTATTCAACATGGTGCATGCTTAGGTCTTGGTTTG GCAGCTCTGGGAACCGCTGATGAAGATATCTATGACGACTTCAAAAGTGCATTATATACTGATAGCGCTGTTGCTGGTGAAGCTGCTGGTATCAGCATGG GCTTGCTCATGGTTGGGACTGCAAGCGAAAAAGCTAGTGAGATGCTTGCATATGCGCATGATACACAACATGAGAAAATCATCAGGGGATTAGCATTGGG AATAGCCCTTACAGTTTATGGAAGAGAAGAAGAAGCAGACACGCTAATCGAGCAGATGACACGGGATCAAGATCCTATACTTCGTTATGGTGGCATGTAT GCATTGGCATTGGCCTACAGTGGTACAGCAAACAACAAGGCCATTCGCCAGTTGCTGCACTTTGCTGTATCAGATGTGAGTGATGATGTCAGGAGGACTG CTGTTCTTGCACTTGGATTTGTCTTGTACTCTGAGCCAGAGCAGACTCCTCGAATTGTCTCCTTGCTTTCAGAGTCATATAACCCACATGTACGATATGG TGCGGCTCTTGCAGTTGGCATCTCCTGTGCAGGCACTGGCTTGAGTGAGGCTATATCATTGCTAGAACCTTTGACGTCAGATGTTGTTGATTTTGTTCGT CAAGGTGCCCTGATTGCAATGGCTATGGTCATGGTCCAGATGAATGAAGCCAGTGATTCTCGTGTTGGAACATTCAGACGGCAATTGGAAAAAATAATTC TTGACAAGCATGAAGACACAATGAGCAAGATGGGAGCAATCCTTGCTTCTGGAATACTTGATGCTGGTGGTAGGAATGTGACTATAAGATTGCTTTCCAA GACAAAGCATGATAAAATCACTGCTGTTGTTGGCCTTGCTGTTTTTAGCCAGTTTTGGTACTGGTATCCTCTTATCTATTTCATAAGCCTGGCATTCTCA CCCACAGCTTTTATTGGACTCAACTATGACTTGAAAGTTCCAAAATTTGAGTTTATATCAAATGCAAAGCCTTCTCTGTTTGAGTATCCAAAACCTACTA CCGTGCCTACCATGGCGTCTGCTGTCAAACTTCCTACTGCAGTTCTGTCAACATCAGTGAAGGCCAAAGCTAGGGCCAAGAAAGAAGCAGAGCAGAAAGC TAGTTTAGAAAAGGCGGCAGGAGCTGAGTCTTCACCTGCAGCAACAACTGCTGGAAAAGGAAAAGCATCTAATGAGAAGGATGGGGATGCTATGCAGGTT GATGGGCAACCAGAGAAGAAAGCAGAGCCCGAGCCTTCTCATGAGATTTTGACAAACCCAGCCAGGGTTGTTCCTACCCAGGAGAAATTTATTAAATTTA TGGAGGATAGCAGATATGTGCCGGTGAAGTCAGCACCTTCAGGGTTTGTTCTCTTGAGAGACCTGCAACCAACTGAGCCCGAAGTGCTTTCTCTTACAGA TACACCTTCATCTACAGCATCACCCGCTAGCGGTTCAGCCACAGGACAGCAAGGTTCAGCATCAGCCATGGCAGTTGATGAGGAACCCCAGCCTCCACAG CCTTTTGAGTACACCTCGTAA
AA sequence Show only first row Show all	>Potri.017G054400.3 pacid=42814300 polypeptide=Potri.017G054400.3.p locus=Potri.017G054400 ID=Potri.017G054400.3.v4.1 annot-version=v4.1 MPETMVSSAGGLLAMLNESHPLLKQHALYNLNNFVDQFWPEISTSVPIIESLYEDDEFDLHQRQLAALLVSKVFYYLGELNDSLSYALGAGSLFDVSEDS DYVHTLLAKAIDEYASLKSKAAESNSDGADVDPRLEAIVERLLDKCIMDGKYQQAMGIAIECRRLDKLEEAIMKSDNVHGTLSYCINVSHSFVNRREYRL EVLQLLVNVYQKLPSPDYLSICQCLMFLDEPEGVASILEKLLRSGNKDEALLAFQIAFDLVENEHQAFLLNVRNRLPPPKSQISEPEQPKSLVPDSSQNE NSSAPEDVQMTEGTSSSTVHEPDPSEVVYAERLTKIKGILSGEMSIQLTLQFLYSHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLR ENLDWLSRATNWAKFSATAGLGVIHRGHLQQGRSLMAPYLPQGGAGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRESIRSTSVEVIQHGACLGLGL AALGTADEDIYDDFKSALYTDSAVAGEAAGISMGLLMVGTASEKASEMLAYAHDTQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMY ALALAYSGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVR QGALIAMAMVMVQMNEASDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKITAVVGLAVFSQFWYWYPLIYFISLAFS PTAFIGLNYDLKVPKFEFISNAKPSLFEYPKPTTVPTMASAVKLPTAVLSTSVKAKARAKKEAEQKASLEKAAGAESSPAATTAGKGKASNEKDGDAMQV DGQPEKKAEPEPSHEILTNPARVVPTQEKFIKFMEDSRYVPVKSAPSGFVLLRDLQPTEPEVLSLTDTPSSTASPASGSATGQQGSASAMAVDEEPQPPQ PFEYTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G32730			26S proteasome regulatory comp...		Potri.017G054400 [exp]	0	1
AT5G05780		RPN8A, AE3, ATH...	ASYMMETRIC LEAVES ENHANCER 3, ...		Potri.008G065300 [exp]	3.16	0.7774
AT2G20580		RPN1A, AtRPN1a	26S proteasome regulatory subu...		Potri.007G137200 [exp]	7.34	0.7430
AT1G63940		MDAR6	monodehydroascorbate reductase...		Potri.001G099600 [exp]	7.87	0.6594
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Potri.007G065700 [exp]	12.32	0.7524	LOS1.1
AT4G29040		RPT2A	regulatory particle AAA-ATPase...		Potri.002G252600 [exp]	14.24	0.7084	Pt-RPT2.2
AT2G20580		RPN1A, AtRPN1a	26S proteasome regulatory subu...		Potri.017G014800 [exp]	14.42	0.6899
AT3G18940			clast3-related (.1)		Potri.004G148700 [exp]	15.19	0.6822
AT3G26340			N-terminal nucleophile aminohy...		Potri.008G177000 [exp]	20.12	0.7197	Pt-PBE1.2
AT4G16830			Hyaluronan / mRNA binding fami...		Potri.014G049300 [exp]	28.98	0.6355
AT5G14040		PHT3;1	phosphate transporter 3;1 (.1)		Potri.017G060800 [exp]	32.64	0.6635

Compare expression of checked genes

Potri.017G054400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.