Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24110 71 / 2e-15 Calcium-binding EF-hand family protein (.1) AT4G26470 66 / 1e-13 Calcium-binding EF-hand family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G314900 [exp] 126 / 7e-37 AT3G24110 216 / 1e-70 Calcium-binding EF-hand family protein (.1) Potri.001G471100 [exp] 73 / 2e-16 AT4G26470 331 / 3e-116 Calcium-binding EF-hand family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016675 [exp] 82 / 2e-19 AT3G24110 203 / 2e-65 Calcium-binding EF-hand family protein (.1) Lus10007131 [exp] 64 / 9e-14 AT3G24110 76 / 2e-25 Calcium-binding EF-hand family protein (.1) Lus10008357 [exp] 62 / 2e-12 AT4G26470 290 / 6e-100 Calcium-binding EF-hand family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF13405 [poplar] [flax] EF-hand_6 EF-hand domain
Representative CDS sequence Show only first row Show all	>Potri.017G054902.1 pacid=42813316 polypeptide=Potri.017G054902.1.p locus=Potri.017G054902 ID=Potri.017G054902.1.v4.1 annot-version=v4.1 ATGTGGTTTCCTCAGTTTAATGAAGAACTGAAACACATCAGAGGGGTATTTGAACAGTATGATGAAGATGTAAATGGATCTATTGACCTTGAGGAACTCA AAAAATGCTTACAAAAGCTGACACTCACTTTAAAAGAGGAAGTTGAGGATCTTTTCCACTCCTGCGACATTGACAATTCAACGAGTTCAATGTTCTTAGA AGTCATCAATCTCCTAGTAGAACATTCATCCTCTCCTCCCAAGAGCATCCACCTTACATCAAAGATGGGTTCACCAGAGCTTCAGGCCACTTTCGATACA ATTGTAGAAGCTTTCTTATTCTTGGATAAGAATGGTAATGGGAAGCTGTTAAAAGAAAGACATGATCAAAGCATTCAAAGAGGATTCTCCTTGGGAAAAA TCCCCAGCACACATCACCGGATCCAGAATTAG
AA sequence Show only first row Show all	>Potri.017G054902.1 pacid=42813316 polypeptide=Potri.017G054902.1.p locus=Potri.017G054902 ID=Potri.017G054902.1.v4.1 annot-version=v4.1 MWFPQFNEELKHIRGVFEQYDEDVNGSIDLEELKKCLQKLTLTLKEEVEDLFHSCDIDNSTSSMFLEVINLLVEHSSSPPKSIHLTSKMGSPELQATFDT IVEAFLFLDKNGNGKLLKERHDQSIQRGFSLGKIPSTHHRIQN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G24110			Calcium-binding EF-hand family...		Potri.017G054902 [exp]	0	1
					Potri.015G107050 [exp]	14.07	0.7357
AT2G45140		PVA12	plant VAP homolog 12 (.1)		Potri.010G031601 [exp]	19.94	0.7740
					Potri.012G078600 [exp]	20.19	0.7276
AT5G44250			Protein of unknown function DU...		Potri.002G127600 [exp]	25.09	0.6636
AT5G06300		LOG7	LONELY GUY 7, Putative lysine ...		Potri.006G204800 [exp]	26.30	0.6323
					Potri.003G098500 [exp]	27.56	0.7698
AT2G02850		ARPN	plantacyanin (.1)		Potri.001G209300 [exp]	37.78	0.7440	Pt-BABL.1
AT1G62680			Pentatricopeptide repeat (PPR)...		Potri.019G099701 [exp]	39.34	0.7465
AT2G25737			Sulfite exporter TauE/SafE fam...		Potri.018G037400 [exp]	40.09	0.7368
AT1G20160		ATSBT5.2	Subtilisin-like serine endopep...		Potri.003G189200 [exp]	42.66	0.6503

Compare expression of checked genes

Potri.017G054902 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.