Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32800 559 / 0 AP4.3A protein kinase family protein (.1) AT3G53810 258 / 4e-75 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53380 258 / 1e-74 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 256 / 3e-74 Concanavalin A-like lectin protein kinase family protein (.1) AT1G15530 252 / 4e-73 Concanavalin A-like lectin protein kinase family protein (.1) AT5G59260 251 / 1e-72 Concanavalin A-like lectin protein kinase family protein (.1) AT5G59270 249 / 8e-72 Concanavalin A-like lectin protein kinase family protein (.1) AT5G03140 249 / 2e-71 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 248 / 2e-71 Concanavalin A-like lectin protein kinase family protein (.1) AT3G59740 245 / 1e-70 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G315000 [exp] 1362 / 0 AT2G32800 930 / 0.0 protein kinase family protein (.1) Potri.009G035701 [exp] 270 / 3e-80 AT3G53810 585 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G035500 [exp] 267 / 3e-78 AT3G53810 598 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.015G083300 [exp] 259 / 9e-76 AT1G15530 759 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.016G087800 [exp] 259 / 5e-75 AT3G53380 881 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G036100 [exp] 257 / 7e-75 AT3G53810 617 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G036300 [exp] 256 / 2e-74 AT3G53810 630 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G130000 [exp] 254 / 1e-73 AT3G53380 866 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.012G084900 [exp] 252 / 4e-73 AT1G15530 734 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007130 [exp] 592 / 0 AT2G32800 977 / 0.0 protein kinase family protein (.1) Lus10016674 [exp] 588 / 0 AT2G32800 966 / 0.0 protein kinase family protein (.1) Lus10016506 [exp] 268 / 1e-78 AT3G53810 651 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040773 [exp] 266 / 4e-78 AT3G53810 654 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004710 [exp] 249 / 3e-75 AT3G55550 486 / 7e-169 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040774 [exp] 257 / 1e-74 AT3G53810 713 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10014037 [exp] 254 / 1e-73 AT1G15530 807 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016507 [exp] 254 / 1e-73 AT3G53810 705 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016620 [exp] 263 / 2e-73 AT5G55830 826 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10019923 [exp] 255 / 3e-73 AT3G53380 927 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.017G055000.1 pacid=42814504 polypeptide=Potri.017G055000.1.p locus=Potri.017G055000 ID=Potri.017G055000.1.v4.1 annot-version=v4.1 ATGAAACTCAACTGCTTTTGTATCATTTTACCGGAGGATTTCGAAGAAATCAAGCCATTTGATCAACCACAAATCCGACCACCTGTGCATGATGATGTCA AAAAGCGCCAACACTGCGGCTGCGGGAGGCAAATACTTCATGTCCTAGGTGATTCATTACGCCGGTTACATGAATCGAAATGGATTGGTTGTTTTCAGGA CGATAAACCAAGTAAACAGCAGTCTGGTCCGTTTCATGACCTGGAAGGAATTCAGATATCTGAGAAGGTTGGTGGTGATAATCCAAGGATATTCAGCTAT GCTGAACTTTATATAGGGTCTAAAGGGTTTTGTGAAAATGAGGTTCTTGGAAGTGGAGGTTTTGGAAAGGTTTATAGAGCAGTTTTACCAAGTGATGGTA CTGTTGTTGCAGTCAAATGCTTGGCTGAGAGAGGGGAACAGTTTGAGAAGACTTTTGAAGCTGAGTTGGTTGCGGTGGCTCAACTGCGACACAGGAATCT TGTCAGGCTAAGAGGGTGGTGTGCTCATGAAGACCAGTTGTTCTTGGTTTATGACTACATGCCTAACCGCAGCCTGGACAGGGTTCTCTTTAGAAGGCCT GAAAACCTGAAAGCGGAACCCCTTGCTTGGGAACGAAGAAGGAAGATAGTCAGCGGCTTGGCAGCAGCATTGCATTATCTCCACGAACAATTGGAGACTC AGATCATTCACCGGGATGTGAAGACAAGCAATGTCATGCTTGACTCACATTATAATGCCCGACTTGGTGACTTCGGCTTGGCGCGGTGGTTAGAACATGA ACTTGAGTATCAAATCCGGACACCTTCAATGAAAAATCACCAGTTTCGCTTGGCTGAATCAACCAGAATTGGTGGCACTATCGGTTATTTATCACCCGAG AGCTTCCAGAAACGAAGTGTCGCTACTGCTAAATCTGATGTTTTCAGCTTTGGAATTGTTGTGTTAGAGGTGGCGTCTAGGAGGCGGGCAGTGGATCTGA CATATCCTGATGATCGGATCATTTTGCTTGACTGGATAAGGGGGTTGTCCGATGAAGGGAAGCTTTTACAAGCAGCGGATAATAGGCTTCCAGATGGCTC TTTTGGGCTTTCTGATATTGAACGCCTGATTCATCTGGGGCTTCTATGCACACTCCACAACCCGCAACTTCGGCCTAACATGAAATGGGTTGTGGAAGCA CTTTCTGGCAACATTTTGGGCAAACTTCCACCTCTTCCATCATTTCGGTCTCATCCTAGATACATAGCTATATCACCTGCAAGCACTAGCATAAGCAAAA CCAACACCACCGCGACCACCTCCGTTCCAAGTTCTGACATGACAATCTCGTTCACTTCATCAGCGTATGTCACAGCTACGGAAGAAACTATGTATGCAAC AGCAGAATTTGAGAGTAGTAATAAACTGAGCTCTTCTAAGTCGAACAACAGAAGTCACCGGCAAAATGCTTTCTTTATGGTGGAAACTCCCAGGGAAATA TCCTACAAGGAAATCATTTCTGCTACAAATAATTTCTCGGACTCACAAAGGGTAGCAGAGGTGGACTTTGGAACTGCTTACTATGGCATCCTTGAAGATG GCCATCAAGTCTTGGTGAAGAGACTTGGCATGACCCAATGCCCTGCAATACGCGTGCGATTTTCAACTGAACTCCTAAACTTAGGCAGGCTCCGCCACCG CAACCTGATACAACTCCGTGGATGGTGCACAGAACATGGTGAGATGCTTGTCGTCTATGATTATTCAGCAAGTCGCCTGATGAGTCACCTTCTTTTCCAT CATGACAATAGAATTGGGCATTCTATTCTACATTGGCGGCACAGATATAACATCATCAAGTCTCTTGCTGCTGCAATTCTTTATCTTCATGAGGAGTGGG ATGAGCAAGTTATCCACAGGAATATTACTACCTCTTCTATCATTCTTGATCCAGACATGAATCCGAGACTTGGTAACTTTGCACTTGCCGAATTCTTGGC AAGAAATGATCATGCCCATAAAGCAGCTGCAAAAGAAAATAAATCAGTCCGTGGAATCTTTGGTTACATGTCTCCCGAGTACATGGAATCTGGTGAGGCA ACCCCAATGGCTGATGTGTATAGCTACGGTGTGGTGGTTCTGGAGGTGGTCAGTGGACAAATGGCAGTTGATTTTCGGAGACCAGAGGTGCTCTTGGTTC TTAGAGTTCATGAATTTGAGACACAGAAGAGACCAATGGAGGATCTGGCTGATATAAGGTTGAACCGTGAATATGATCATGAAGAATTGATCAGAATCGT CAAATTGGGGATTGCATGCACCAGGTCCAACCCAGAATTAAGGCCAAGCATTAGGCAGATTGTAAGGATACTTGACGGAAACGATCAATGGTTCATGGAA GGAGGGAAAAGGAAGGAAAGCAGAGAAGAATGGAGACAAAACAATGCTAGTTCTTTGTCATTGATTAGAAGAATCCAAGCTCTGGGGATTAAGTGA
AA sequence Show only first row Show all	>Potri.017G055000.1 pacid=42814504 polypeptide=Potri.017G055000.1.p locus=Potri.017G055000 ID=Potri.017G055000.1.v4.1 annot-version=v4.1 MKLNCFCIILPEDFEEIKPFDQPQIRPPVHDDVKKRQHCGCGRQILHVLGDSLRRLHESKWIGCFQDDKPSKQQSGPFHDLEGIQISEKVGGDNPRIFSY AELYIGSKGFCENEVLGSGGFGKVYRAVLPSDGTVVAVKCLAERGEQFEKTFEAELVAVAQLRHRNLVRLRGWCAHEDQLFLVYDYMPNRSLDRVLFRRP ENLKAEPLAWERRRKIVSGLAAALHYLHEQLETQIIHRDVKTSNVMLDSHYNARLGDFGLARWLEHELEYQIRTPSMKNHQFRLAESTRIGGTIGYLSPE SFQKRSVATAKSDVFSFGIVVLEVASRRRAVDLTYPDDRIILLDWIRGLSDEGKLLQAADNRLPDGSFGLSDIERLIHLGLLCTLHNPQLRPNMKWVVEA LSGNILGKLPPLPSFRSHPRYIAISPASTSISKTNTTATTSVPSSDMTISFTSSAYVTATEETMYATAEFESSNKLSSSKSNNRSHRQNAFFMVETPREI SYKEIISATNNFSDSQRVAEVDFGTAYYGILEDGHQVLVKRLGMTQCPAIRVRFSTELLNLGRLRHRNLIQLRGWCTEHGEMLVVYDYSASRLMSHLLFH HDNRIGHSILHWRHRYNIIKSLAAAILYLHEEWDEQVIHRNITTSSIILDPDMNPRLGNFALAEFLARNDHAHKAAAKENKSVRGIFGYMSPEYMESGEA TPMADVYSYGVVVLEVVSGQMAVDFRRPEVLLVLRVHEFETQKRPMEDLADIRLNREYDHEELIRIVKLGIACTRSNPELRPSIRQIVRILDGNDQWFME GGKRKESREEWRQNNASSLSLIRRIQALGIK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G32800		AP4.3A	protein kinase family protein ...		Potri.017G055000 [exp]	0	1
AT4G12350	MYB	ATMYB42	myb domain protein 42 (.1)		Potri.001G118800 [exp]	1.00	0.9074
AT1G55760			BTB/POZ domain-containing prot...		Potri.001G468700 [exp]	1.73	0.8849
AT1G62400		HT1	high leaf temperature 1, Prote...		Potri.012G080000 [exp]	2.00	0.8898
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Potri.004G203400 [exp]	3.00	0.8556
AT5G27020			unknown protein		Potri.013G011950 [exp]	3.87	0.8767
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Potri.002G073500 [exp]	4.00	0.8566
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Potri.003G183900 [exp]	4.89	0.8840
AT2G20030			RING/U-box superfamily protein...		Potri.002G153400 [exp]	5.38	0.8017
AT5G41800			Transmembrane amino acid trans...		Potri.003G138100 [exp]	6.48	0.8711
AT5G20260			Exostosin family protein (.1)		Potri.018G124945 [exp]	6.48	0.8717

Compare expression of checked genes

Potri.017G055000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.